Sequence Similarity Clusters for the Entities in PDB 3O41

Entity #1 | Chains: B,L
Mouse monoclonal antibody 101F Fab light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21496
95 % 1 2 18678 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 6 101 157
70 % 377 2392 1
50 % 771 4843 1
40 % 771 4843 1
30 % 836 5705 1
Entity #2 | Chains: A,H
Mouse monoclonal antibody 101F Fab heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21421
95 % 1 2 18634 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 4 8 4514
70 % 376 2342 2
50 % 772 4843 1
40 % 772 4843 1
30 % 837 5705 1
Entity #3 | Chains: C,P
Fusion glycoprotein F1 protein, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3IFL 2 H 12A11 FAB antibody heavy chain 10090
2 3IFN 1 H 12A11 FAB antibody heavy chain 10090
3 3RKD 3 D, H Monoclonal Antibody, Heavy Chain 10090
4 3O41 2 A, H Mouse monoclonal antibody 101F Fab heavy chain 10090
5 3IFO 1 A, H 10D5 FAB antibody heavy chain 10090
6 3O45 2 A, H Mouse monoclonal antibody 101F 101F Fab heavy chain 10090
7 1JRH 2 H ANTIBODY A6 FAB FRAGMENT;PEPSIN DIGESTION OF INTACT ANTIBODY 10090
8 3IFP 1 A, C, E, H 12B4 FAB antibody heavy chain 10090