Sequence Similarity Clusters for the Entities in PDB 3O41

Entity #1 | Chains: B,L
Mouse monoclonal antibody 101F Fab light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21142
95 % 1 2 18403 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 5 99 154
70 % 363 2327 1
50 % 741 4713 1
40 % 741 4713 1
30 % 804 5567 1
Entity #2 | Chains: A,H
Mouse monoclonal antibody 101F Fab heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21070
95 % 1 2 18360 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 4 8 4452
70 % 362 2280 2
50 % 742 4713 1
40 % 742 4713 1
30 % 805 5567 1
Entity #3 | Chains: C,P
Fusion glycoprotein F1 protein, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3IFL 2 H 12A11 FAB antibody heavy chain 10090
2 3IFN 1 H 12A11 FAB antibody heavy chain 10090
3 3RKD 3 D, H Monoclonal Antibody, Heavy Chain 10090
4 3O41 2 A, H Mouse monoclonal antibody 101F Fab heavy chain 10090
5 3IFO 1 A, H 10D5 FAB antibody heavy chain 10090
6 3O45 2 A, H Mouse monoclonal antibody 101F 101F Fab heavy chain 10090
7 1JRH 2 H ANTIBODY A6 FAB FRAGMENT;PEPSIN DIGESTION OF INTACT ANTIBODY 10090
8 3IFP 1 A, C, E, H 12B4 FAB antibody heavy chain 10090