POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

Crystal Structure of 101F Fab Bound to 15-mer Peptide Epitope
Sequence Clustering and Redundancy Reduction Results
3O41
Cluster # 3292 Members. Sequence cutoff: 90% Cluster size: 8 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
Select for download / view details OR: Select two chains for comparison
  Download      Details  
1 3IFL 2 H 12A11 FAB antibody heavy chain 10090  
2 3IFN 1 H 12A11 FAB antibody heavy chain 10090  
3 3RKD 3 D, H Monoclonal Antibody, Heavy Chain 10090  
4 3O41 2 A, H Mouse monoclonal antibody 101F Fab heavy chain 10090  
5 3IFO 1 A, H 10D5 FAB antibody heavy chain 10090  
6 3O45 2 A, H Mouse monoclonal antibody 101F 101F Fab heavy chain 10090  
7 1JRH 2 H ANTIBODY A6 FAB FRAGMENT;PEPSIN DIGESTION OF INTACT ANTIBODY 10090  
8 3IFP 1 A, C, E, H 12B4 FAB antibody heavy chain 10090  
 
Sequence Clusters for the Sequence Entities in PDB 3O41
Entity #1: Chains: B,L - Mouse monoclonal antibody 101F Fab light chain protein, length: 218 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 15882
95% 1 2 14051
90% 2 64 270
70% 192 1317 3
50% 469 3136 1
40% 469 3137 1
30% 511 3713 1
Entity #2: Chains: A,H - Mouse monoclonal antibody 101F Fab heavy chain protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 15827
95% 1 2 14019
90% 4 8 3292
70% 230 1511 2
50% 470 3136 1
40% 470 3137 1
30% 512 3713 1
Entity #3: Chains: C,P - Fusion glycoprotein F1 protein, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.