Sequence Similarity Clusters for the Entities in PDB 3O41

Entity #1 | Chains: B,L
Mouse monoclonal antibody 101F Fab light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21998
95 % 1 2 19074 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 7 105 152
70 % 401 2474 1
50 % 820 5011 1
40 % 820 5011 1
30 % 922 5941 1
Entity #2 | Chains: A,H
Mouse monoclonal antibody 101F Fab heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21919
95 % 1 2 19029 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 4 8 4625
70 % 400 2424 2
50 % 821 5011 1
40 % 821 5011 1
30 % 923 5941 1
Entity #3 | Chains: C,P
Fusion glycoprotein F1 protein, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3O41 2 A, H Mouse monoclonal antibody 101F Fab heavy chain 10090
2 3O45 2 A, H Mouse monoclonal antibody 101F 101F Fab heavy chain 10090