Sequence Similarity Clusters for the Entities in PDB 3O41

Entity #1 | Chains: B,L
Mouse monoclonal antibody 101F Fab light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21261
95 % 1 2 18500 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 6 101 155
70 % 368 2362 1
50 % 753 4781 1
40 % 753 4781 1
30 % 816 5635 1
Entity #2 | Chains: A,H
Mouse monoclonal antibody 101F Fab heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21187
95 % 1 2 18457 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 4 8 4481
70 % 367 2311 2
50 % 754 4781 1
40 % 754 4781 1
30 % 817 5635 1
Entity #3 | Chains: C,P
Fusion glycoprotein F1 protein, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures