Sequence Similarity Clusters for the Entities in PDB 3O41

Entity #1 | Chains: B,L
Mouse monoclonal antibody 101F Fab light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20664
95 % 1 2 17989 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 98 151
70 % 351 2264 1
50 % 718 4587 1
40 % 718 4587 1
30 % 776 5394 1
Entity #2 | Chains: A,H
Mouse monoclonal antibody 101F Fab heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20592
95 % 1 2 17946 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 8 4366
70 % 351 2222 2
50 % 719 4587 1
40 % 719 4587 1
30 % 777 5394 1
Entity #3 | Chains: C,P
Fusion glycoprotein F1 protein, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.