Sequence Similarity Clusters for the Entities in PDB 3NGB

Entity #1 | Chains: A,D,G,I
Envelope glycoprotein gp160 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 28 910
95 % 37 53 445
90 % 37 53 473
70 % 68 122 167
50 % 68 122 198
40 % 68 122 215
30 % 68 125 226
Entity #2 | Chains: B,E,H,J
Antigen binding fragment of heavy chain: Antibody VRC01 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18750
95 % 3 4 6931
90 % 12 15 2819
70 % 1140 1952 1
50 % 2346 4026 1
40 % 2347 4028 1
30 % 2694 4764 1
Entity #3 | Chains: C,F,K,L
Antigen binding fragment of light chain: Antibody VRC01 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8128
95 % 13 19 2201
90 % 340 590 3
70 % 963 1653 3
50 % 2347 4026 1
40 % 2348 4028 1
30 % 2695 4764 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.