Sequence Similarity Clusters for the Entities in PDB 3NGB

Entity #1 | Chains: A,D,G,I
Envelope glycoprotein gp160 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 29 931
95 % 38 54 500
90 % 38 54 540
70 % 70 125 171
50 % 70 125 206
40 % 70 125 230
30 % 70 128 232
Entity #2 | Chains: B,E,H,J
Antigen binding fragment of heavy chain: Antibody VRC01 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19312
95 % 3 4 7138
90 % 12 15 2952
70 % 1192 2041 1
50 % 2462 4220 1
40 % 2462 4221 1
30 % 2814 4972 1
Entity #3 | Chains: C,F,K,L
Antigen binding fragment of light chain: Antibody VRC01 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8424
95 % 13 19 2323
90 % 359 624 3
70 % 1009 1729 2
50 % 2463 4220 1
40 % 2463 4221 1
30 % 2815 4972 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.