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An Information Portal to 107049 Biological Macromolecular Structures

Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3NGB
Sequence Clusters for the Sequence Entities in PDB 3NGB
Entity #1: Chains: A,D,G,I - Envelope glycoprotein gp160 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 15 2033
95% 29 36 716
90% 29 36 748
70% 38 57 355
50% 38 57 393
40% 38 57 415
30% 38 57 422
Entity #2: Chains: B,E,H,J - Antigen binding fragment of heavy chain: Antibody VRC01 protein, length: 224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 16076
95% 3 3 9523
90% 12 14 2883
70% 915 1537 2
50% 1892 3188 1
40% 1893 3189 1
30% 2152 3771 1
Entity #3: Chains: C,F,K,L - Antigen binding fragment of light chain: Antibody VRC01 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 11724
95% 12 15 2696
90% 12 15 2731
70% 793 1339 3
50% 1893 3188 1
40% 1894 3189 1
30% 2153 3771 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.