Sequence Similarity Clusters for the Entities in PDB 3NGB

Entity #1 | Chains: A,D,G,I
Envelope glycoprotein gp160 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 24 1014
95 % 35 48 474
90 % 35 48 500
70 % 49 77 273
50 % 49 77 310
40 % 49 77 336
30 % 65 111 242
Entity #2 | Chains: B,E,H,J
Antigen binding fragment of heavy chain: Antibody VRC01 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17575
95 % 3 3 10376
90 % 12 14 3199
70 % 1051 1790 1
50 % 2161 3692 1
40 % 2162 3693 1
30 % 2452 4355 1
Entity #3 | Chains: C,F,K,L
Antigen binding fragment of light chain: Antibody VRC01 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 12849
95 % 13 18 2408
90 % 257 461 4
70 % 887 1526 3
50 % 2162 3692 1
40 % 2163 3693 1
30 % 2453 4355 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.