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Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3NGB
Sequence Clusters for the Sequence Entities in PDB 3NGB
Entity #1: Chains: A,D,G,I - Envelope glycoprotein gp160 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 15 2048
95% 29 36 723
90% 29 36 756
70% 38 57 357
50% 38 57 395
40% 38 57 417
30% 38 57 424
Entity #2: Chains: B,E,H,J - Antigen binding fragment of heavy chain: Antibody VRC01 protein, length: 224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 16159
95% 3 3 9573
90% 12 14 2902
70% 921 1548 2
50% 1904 3210 1
40% 1905 3211 1
30% 2164 3793 1
Entity #3: Chains: C,F,K,L - Antigen binding fragment of light chain: Antibody VRC01 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 11807
95% 12 15 2715
90% 12 15 2749
70% 798 1349 3
50% 1905 3210 1
40% 1906 3211 1
30% 2165 3793 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.