Sequence Similarity Clusters for the Entities in PDB 3NGB

Entity #1 | Chains: A,D,G,I
Envelope glycoprotein gp160 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 29 1000
95 % 39 55 556
90 % 39 55 590
70 % 71 126 178
50 % 71 126 221
40 % 71 126 240
30 % 71 129 248
Entity #2 | Chains: B,E,H,J
Antigen binding fragment of heavy chain: Antibody VRC01 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20646
95 % 3 4 7675
90 % 12 15 3127
70 % 1287 2238 2
50 % 2655 4619 1
40 % 2655 4619 1
30 % 3053 5440 1
Entity #3 | Chains: C,F,K,L
Antigen binding fragment of light chain: Antibody VRC01 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 9002
95 % 13 19 2488
90 % 397 697 3
70 % 1302 2280 1
50 % 2656 4619 1
40 % 2656 4619 1
30 % 3054 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.