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An Information Portal to 105212 Biological Macromolecular Structures

Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3NGB
Sequence Clusters for the Sequence Entities in PDB 3NGB
Entity #1: Chains: A,D,G,I - Envelope glycoprotein gp160 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 15 1979
95% 29 36 688
90% 29 36 720
70% 38 57 347
50% 38 57 383
40% 38 57 404
30% 38 57 414
Entity #2: Chains: B,E,H,J - Antigen binding fragment of heavy chain: Antibody VRC01 protein, length: 224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 15628
95% 3 3 9311
90% 12 14 2794
70% 897 1498 2
50% 1852 3106 1
40% 1853 3107 1
30% 2108 3679 1
Entity #3: Chains: C,F,K,L - Antigen binding fragment of light chain: Antibody VRC01 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 11391
95% 12 15 2608
90% 12 15 2644
70% 775 1303 3
50% 1853 3106 1
40% 1854 3107 1
30% 2109 3679 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.