Sequence Similarity Clusters for the Entities in PDB 3NGB

Entity #1 | Chains: A,D,G,I
Envelope glycoprotein gp160 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 28 900
95 % 37 53 434
90 % 37 53 461
70 % 68 121 166
50 % 68 121 198
40 % 68 121 214
30 % 68 124 223
Entity #2 | Chains: B,E,H,J
Antigen binding fragment of heavy chain: Antibody VRC01 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18416
95 % 3 3 10921
90 % 12 14 3349
70 % 1118 1912 1
50 % 2297 3940 1
40 % 2298 3941 1
30 % 2640 4669 1
Entity #3 | Chains: C,F,K,L
Antigen binding fragment of light chain: Antibody VRC01 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 13526
95 % 13 18 2538
90 % 280 505 3
70 % 944 1620 3
50 % 2298 3940 1
40 % 2299 3941 1
30 % 2641 4669 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.