POP-OUT | CLOSE

An Information Portal to 106082 Biological Macromolecular Structures

Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3NGB
Sequence Clusters for the Sequence Entities in PDB 3NGB
Entity #1: Chains: A,D,G,I - Envelope glycoprotein gp160 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 15 2010
95% 29 36 699
90% 29 36 730
70% 38 57 349
50% 38 57 389
40% 38 57 409
30% 38 57 418
Entity #2: Chains: B,E,H,J - Antigen binding fragment of heavy chain: Antibody VRC01 protein, length: 224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 15889
95% 3 3 9447
90% 12 14 2846
70% 909 1528 2
50% 1880 3170 1
40% 1881 3171 1
30% 2140 3753 1
Entity #3: Chains: C,F,K,L - Antigen binding fragment of light chain: Antibody VRC01 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 11578
95% 12 15 2660
90% 12 15 2697
70% 789 1332 3
50% 1881 3170 1
40% 1882 3171 1
30% 2141 3753 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.