Sequence Similarity Clusters for the Entities in PDB 3NGB

Entity #1 | Chains: A,D,G,I
Envelope glycoprotein gp160 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 28 894
95 % 37 52 435
90 % 37 52 463
70 % 68 120 166
50 % 68 120 198
40 % 68 120 214
30 % 68 123 222
Entity #2 | Chains: B,E,H,J
Antigen binding fragment of heavy chain: Antibody VRC01 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18276
95 % 3 3 10832
90 % 12 14 3328
70 % 1113 1896 1
50 % 2287 3908 1
40 % 2288 3909 1
30 % 2630 4637 1
Entity #3 | Chains: C,F,K,L
Antigen binding fragment of light chain: Antibody VRC01 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 13407
95 % 13 18 2514
90 % 279 502 3
70 % 941 1611 3
50 % 2288 3908 1
40 % 2289 3909 1
30 % 2631 4637 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.