Sequence Similarity Clusters for the Entities in PDB 3NGB

Entity #1 | Chains: A,D,G,I
Envelope glycoprotein gp160 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 29 959
95 % 39 55 508
90 % 39 55 546
70 % 71 126 179
50 % 71 126 216
40 % 71 126 238
30 % 71 129 240
Entity #2 | Chains: B,E,H,J
Antigen binding fragment of heavy chain: Antibody VRC01 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19752
95 % 3 4 7315
90 % 12 15 3013
70 % 1234 2109 1
50 % 2549 4363 1
40 % 2549 4363 1
30 % 2927 5147 1
Entity #3 | Chains: C,F,K,L
Antigen binding fragment of light chain: Antibody VRC01 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8629
95 % 13 19 2383
90 % 368 644 3
70 % 1033 1773 2
50 % 2550 4363 1
40 % 2550 4363 1
30 % 2928 5147 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.