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Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3NGB
Sequence Clusters for the Sequence Entities in PDB 3NGB
Entity #1: Chains: A,D,G,I - Envelope glycoprotein gp160 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 24 965
95% 34 47 493
90% 34 47 518
70% 48 75 265
50% 48 75 303
40% 48 75 333
30% 48 75 343
Entity #2: Chains: B,E,H,J - Antigen binding fragment of heavy chain: Antibody VRC01 protein, length: 224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 16683
95% 3 3 9866
90% 12 14 2995
70% 976 1656 1
50% 2012 3425 1
40% 2013 3426 1
30% 2282 4043 1
Entity #3: Chains: C,F,K,L - Antigen binding fragment of light chain: Antibody VRC01 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 12206
95% 13 18 2289
90% 241 425 4
70% 836 1434 3
50% 2013 3425 1
40% 2014 3426 1
30% 2283 4043 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.