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An Information Portal to 109093 Biological Macromolecular Structures

Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3NGB
Sequence Clusters for the Sequence Entities in PDB 3NGB
Entity #1: Chains: A,D,G,I - Envelope glycoprotein gp160 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 19 1400
95% 30 40 612
90% 30 40 642
70% 42 64 332
50% 42 64 364
40% 42 64 389
30% 42 64 396
Entity #2: Chains: B,E,H,J - Antigen binding fragment of heavy chain: Antibody VRC01 protein, length: 224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 16370
95% 3 3 9694
90% 12 14 2936
70% 934 1590 2
50% 1931 3295 1
40% 1932 3296 1
30% 2193 3893 1
Entity #3: Chains: C,F,K,L - Antigen binding fragment of light chain: Antibody VRC01 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 11968
95% 13 18 2245
90% 235 413 4
70% 808 1388 3
50% 1932 3295 1
40% 1933 3296 1
30% 2194 3893 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.