POP-OUT | CLOSE

An Information Portal to 108607 Biological Macromolecular Structures

Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3NGB
Sequence Clusters for the Sequence Entities in PDB 3NGB
Entity #1: Chains: A,D,G,I - Envelope glycoprotein gp160 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 19 1397
95% 30 40 609
90% 30 40 639
70% 42 64 332
50% 42 64 363
40% 42 64 388
30% 42 64 395
Entity #2: Chains: B,E,H,J - Antigen binding fragment of heavy chain: Antibody VRC01 protein, length: 224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 16307
95% 3 3 9662
90% 12 14 2926
70% 933 1580 2
50% 1928 3274 1
40% 1929 3275 1
30% 2190 3863 1
Entity #3: Chains: C,F,K,L - Antigen binding fragment of light chain: Antibody VRC01 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 11922
95% 13 18 2236
90% 235 410 4
70% 806 1377 3
50% 1929 3274 1
40% 1930 3275 1
30% 2191 3863 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.