Sequence Similarity Clusters for the Entities in PDB 3MME

Entity #1 | Chains: A,C,H
PG16 HEAVY CHAIN FAB protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10197
95 % 4 4 4645 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 1.7
PDBFlex
90 % 4 4 4667
70 % 2105 2223 2
50 % 4342 4589 1
40 % 4342 4589 1
30 % 5129 5394 1
Entity #2 | Chains: B,D,L
PG16 LIGHT CHAIN FAB protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4221
95 % 4 4 4670 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.6
PDBFlex
90 % 68 73 262
70 % 2141 2265 1
50 % 4343 4589 1
40 % 4343 4589 1
30 % 5130 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.