Sequence Similarity Clusters for the Entities in PDB 3MME

Entity #1 | Chains: A,C,H
PG16 HEAVY CHAIN FAB protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10016
95 % 4 4 4538 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 1.5
PDBFlex
90 % 4 4 4559
70 % 2066 2172 1
50 % 4266 4489 1
40 % 4266 4489 1
30 % 5049 5290 1
Entity #2 | Chains: B,D,L
PG16 LIGHT CHAIN FAB protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4112
95 % 4 4 4562 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.7
PDBFlex
90 % 64 69 265
70 % 363 394 9
50 % 4267 4489 1
40 % 4267 4489 1
30 % 5050 5290 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.