Sequence Similarity Clusters for the Entities in PDB 3MME

Entity #1 | Chains: A,C,H
PG16 HEAVY CHAIN FAB protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10467
95 % 4 4 4788 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 1.5
PDBFlex
90 % 4 4 4815
70 % 2189 2311 2
50 % 4526 4781 1
40 % 4526 4781 1
30 % 5362 5635 1
Entity #2 | Chains: B,D,L
PG16 LIGHT CHAIN FAB protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4372
95 % 4 4 4816 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.6
PDBFlex
90 % 81 86 241
70 % 2234 2362 1
50 % 4527 4781 1
40 % 4527 4781 1
30 % 5363 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures