Sequence Similarity Clusters for the Entities in PDB 3MME

Entity #1 | Chains: A,C,H
PG16 HEAVY CHAIN FAB protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10412
95 % 4 4 4756 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 1.5
PDBFlex
90 % 4 4 4778
70 % 2158 2280 2
50 % 4458 4713 1
40 % 4458 4713 1
30 % 5294 5567 1
Entity #2 | Chains: B,D,L
PG16 LIGHT CHAIN FAB protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4335
95 % 4 4 4784 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.6
PDBFlex
90 % 75 80 245
70 % 2199 2327 1
50 % 4459 4713 1
40 % 4459 4713 1
30 % 5295 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.