Sequence Similarity Clusters for the Entities in PDB 3MME

Entity #1 | Chains: A,C,H
PG16 HEAVY CHAIN FAB protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10115
95 % 4 4 4593 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 1.5
PDBFlex
90 % 4 4 4618
70 % 2092 2201 1
50 % 4316 4545 1
40 % 4316 4545 1
30 % 5103 5350 1
Entity #2 | Chains: B,D,L
PG16 LIGHT CHAIN FAB protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4167
95 % 4 4 4616 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.7
PDBFlex
90 % 66 71 262
70 % 367 398 10
50 % 4317 4545 1
40 % 4317 4545 1
30 % 5104 5350 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.