Sequence Similarity Clusters for the Entities in PDB 3MKZ

Entity #1 | Chains: A,B,N,U
Protein sopB protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22780
95 % 1 1 19493 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 1 1 18961
70 % 1 1 17501
50 % 1 1 15226
40 % 1 1 13564
30 % 1 1 11606
Entity #2 | Chains: C,D,Y,Z
DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.