Sequence Similarity Clusters for the Entities in PDB 3MKW

Entity #1 | Chains: T,U
DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,P
Protein sopB protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39245
95 % 1 1 33281 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 1 31821
70 % 1 1 28381
50 % 1 1 24305
40 % 1 1 21409
30 % 1 1 17882

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures