Sequence Similarity Clusters for the Entities in PDB 3LRS

Entity #1 | Chains: A,C,E,H
PG-16 Heavy Chain Fab protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10048
95 % 1 4 4553 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 1.5
PDBFlex
90 % 1 4 4579
70 % 1025 2178 1
50 % 2112 4501 1
40 % 2112 4501 1
30 % 2390 5303 1
Entity #2 | Chains: B,D,F,L
PG-16 Light Chain Fab protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 4131
95 % 1 4 4577 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.7
PDBFlex
90 % 22 69 269
70 % 182 394 10
50 % 2113 4501 1
40 % 2113 4501 1
30 % 2391 5303 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.