Sequence Similarity Clusters for the Entities in PDB 3LRS

Entity #1 | Chains: A,C,E,H
PG-16 Heavy Chain Fab protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10637
95 % 1 4 4877 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 1.5
PDBFlex
90 % 1 4 4898
70 % 1111 2366 2
50 % 2294 4892 1
40 % 2294 4892 1
30 % 2598 5759 1
Entity #2 | Chains: B,D,F,L
PG-16 Light Chain Fab protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 4452
95 % 1 4 4907 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.6
PDBFlex
90 % 37 88 234
70 % 1124 2416 1
50 % 2295 4892 1
40 % 2295 4892 1
30 % 2599 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures