Sequence Similarity Clusters for the Entities in PDB 3LRS

Entity #1 | Chains: A,C,E,H
PG-16 Heavy Chain Fab protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 11468
95 % 1 4 5036 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 1.7
PDBFlex
90 % 1 4 5072
70 % 1174 2511 2
50 % 2422 5180 1
40 % 2771 5834 1
30 % 3375 7269 1
Entity #2 | Chains: B,D,F,L
PG-16 Light Chain Fab protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20935
95 % 1 4 5162 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 35 86 251
70 % 1184 2553 1
50 % 2423 5180 1
40 % 2772 5834 1
30 % 3376 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures