Sequence Similarity Clusters for the Entities in PDB 3LKU

Entity #1 | Chains: A,C,E
UPF0363 protein YOR164C protein, length: 292 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10296
95 % 2 5 3509 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 2 5 3558
70 % 2 5 3512
50 % 2 5 3423
40 % 2 5 3312
30 % 2 5 3103
Entity #2 | Chains: B,D,F
Ubiquitin-like protein MDY2 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 2973
95 % 2 5 3671 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 5 3724
70 % 2 5 3669
50 % 2 5 3563
40 % 2 5 3437
30 % 2 5 3210

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures