Sequence Similarity Clusters for the Entities in PDB 3LKU

Entity #1 | Chains: A,C,E
UPF0363 protein YOR164C protein, length: 292 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10155
95 % 2 5 3455 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 2 5 3498
70 % 2 5 3465
50 % 2 5 3387
40 % 2 5 3280
30 % 2 5 3072
Entity #2 | Chains: B,D,F
Ubiquitin-like protein MDY2 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 2909
95 % 2 5 3617 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 5 3664
70 % 2 5 3622
50 % 2 5 3526
40 % 2 5 3404
30 % 2 5 3179

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.