Sequence Similarity Clusters for the Entities in PDB 3LKU

Entity #1 | Chains: A,C,E
UPF0363 protein YOR164C protein, length: 292 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 11572
95 % 2 5 3733 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 2 5 3801
70 % 2 5 3732
50 % 2 5 3642
40 % 2 5 3463
30 % 3 6 3022
Entity #2 | Chains: B,D,F
Ubiquitin-like protein MDY2 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 3246
95 % 2 5 3552 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 5 3631
70 % 2 5 3567
50 % 2 5 3488
40 % 2 5 3335
30 % 2 5 3084

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures