Sequence Similarity Clusters for the Entities in PDB 3LEY

Entity #1 | Chains: H
6a7 Antibody Heavy Chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57887
95 % 2 2 22121 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 9 20 2039
70 % 392 2172 1
50 % 804 4489 1
40 % 804 4489 1
30 % 875 5290 1
Entity #2 | Chains: L
6a7 Antibody Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58082
95 % 15 49 718 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.9
PDBFlex
90 % 15 50 711
70 % 328 1822 2
50 % 805 4489 1
40 % 805 4489 1
30 % 876 5290 1
Entity #3 | Chains: P
Envelope glycoprotein gp41 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.