Sequence Similarity Clusters for the Entities in PDB 3LEY

Entity #1 | Chains: H
6a7 Antibody Heavy Chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60756
95 % 2 2 23341 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 9 20 2165
70 % 427 2342 2
50 % 877 4843 1
40 % 877 4843 1
30 % 956 5705 1
Entity #2 | Chains: L
6a7 Antibody Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60959
95 % 17 52 675 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.8
PDBFlex
90 % 17 53 680
70 % 428 2392 1
50 % 878 4843 1
40 % 878 4843 1
30 % 957 5705 1
Entity #3 | Chains: P
Envelope glycoprotein gp41 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures