Sequence Similarity Clusters for the Entities in PDB 3LEX

Entity #1 | Chains: A,H
11f10 Antibody Heavy Chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39055
95 % 1 2 22307 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 20 2068
70 % 310 2201 1
50 % 635 4545 1
40 % 635 4545 1
30 % 687 5350 1
Entity #2 | Chains: B,L
11f10 Antibody Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39249
95 % 11 51 662 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.9
PDBFlex
90 % 11 52 663
70 % 257 1845 2
50 % 636 4545 1
40 % 636 4545 1
30 % 688 5350 1
Entity #3 | Chains: C,P
Envelope glycoprotein gp41 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.