Sequence Similarity Clusters for the Entities in PDB 3LEX

Entity #1 | Chains: A,H
11f10 Antibody Heavy Chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39025
95 % 1 2 24518 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 8 21 2121
70 % 366 2497 2
50 % 751 5152 1
40 % 917 5806 1
30 % 1129 7240 1
Entity #2 | Chains: B,L
11f10 Antibody Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34906
95 % 11 50 718 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.9
PDBFlex
90 % 11 53 688
70 % 366 2538 1
50 % 752 5152 1
40 % 918 5806 1
30 % 1130 7240 1
Entity #3 | Chains: C,P
Envelope glycoprotein gp41 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures