Sequence Similarity Clusters for the Entities in PDB 3LEX

Entity #1 | Chains: A,H
11f10 Antibody Heavy Chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41586
95 % 1 2 23801 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 20 2228
70 % 359 2424 2
50 % 737 5011 1
40 % 737 5011 1
30 % 831 5941 1
Entity #2 | Chains: B,L
11f10 Antibody Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41787
95 % 11 52 680 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.8
PDBFlex
90 % 11 53 686
70 % 360 2474 1
50 % 738 5011 1
40 % 738 5011 1
30 % 832 5941 1
Entity #3 | Chains: C,P
Envelope glycoprotein gp41 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures