Sequence Similarity Clusters for the Entities in PDB 3LEX

Entity #1 | Chains: A,H
11f10 Antibody Heavy Chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40209
95 % 1 2 23022 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 20 2130
70 % 323 2282 2
50 % 662 4717 1
40 % 662 4717 1
30 % 719 5571 1
Entity #2 | Chains: B,L
11f10 Antibody Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40405
95 % 11 51 689 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.8
PDBFlex
90 % 11 52 692
70 % 324 2329 1
50 % 663 4717 1
40 % 663 4717 1
30 % 720 5571 1
Entity #3 | Chains: C,P
Envelope glycoprotein gp41 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.