Sequence Similarity Clusters for the Entities in PDB 3LEX

Entity #1 | Chains: A,H
11f10 Antibody Heavy Chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41088
95 % 1 2 23503 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 20 2194
70 % 347 2376 2
50 % 712 4913 1
40 % 712 4913 1
30 % 772 5780 1
Entity #2 | Chains: B,L
11f10 Antibody Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41287
95 % 11 52 677 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.8
PDBFlex
90 % 11 53 684
70 % 348 2426 1
50 % 713 4913 1
40 % 713 4913 1
30 % 773 5780 1
Entity #3 | Chains: C,P
Envelope glycoprotein gp41 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures