Sequence Similarity Clusters for the Entities in PDB 3LEV

Entity #1 | Chains: A
RNA polymerase sigma factor protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28937
95 % 1 2 24021 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 2 23205
70 % 1 2 21153
50 % 1 2 18296
40 % 1 2 16301
30 % 1 2 13934
Entity #2 | Chains: L
2F5 ANTIBODY LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 10742
95 % 27 41 1320 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 387 763 2
70 % 1219 2426 1
50 % 2493 4913 1
40 % 2493 4913 1
30 % 2842 5780 1
Entity #3 | Chains: H
2F5 ANTIBODY HEAVY CHAIN protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 21162
95 % 27 41 1317
90 % 27 41 1344
70 % 1209 2376 2
50 % 2494 4913 1
40 % 2494 4913 1
30 % 2843 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures