Sequence Similarity Clusters for the Entities in PDB 3L28

Entity #1 | Chains: A,B,C,D,E,F
Polymerase cofactor VP35 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 13720
95 % 17 18 1159 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.7
PDBFlex
90 % 17 18 1187
70 % 18 19 1188
50 % 18 19 1240
40 % 19 20 1153
30 % 19 20 1140

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.