Sequence Similarity Clusters for the Entities in PDB 3L25

Entity #1 | Chains: A,B,D,E
Polymerase cofactor VP35 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 1735
95 % 13 18 1159 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.7
PDBFlex
90 % 13 18 1187
70 % 14 19 1188
50 % 14 19 1240
40 % 14 20 1154
30 % 14 20 1142
Entity #2 | Chains: C,F
RNA (5'-R(*CP*GP*CP*AP*UP*GP*CP*G)-3') rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.