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An Information Portal to 110790 Biological Macromolecular Structures

Detailed structural insight into the DNA cleavage complex of type IIA topoisomerases (cleaved form)
Sequence Clustering and Redundancy Reduction Results
3KSA
Sequence Clusters for the Sequence Entities in PDB 3KSA
Entity #1: Chains: A,B - DNA topoisomerase 4 subunit A protein, length: 496 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 14 1098
95% 9 14 1506
90% 9 14 1541
70% 9 14 1566
50% 17 25 794
40% 17 25 819
30% 17 25 817
Entity #2: Chains: C,D - DNA topoisomerase 4 subunit B protein, length: 268 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 12 1446
95% 8 12 1947
90% 8 12 1989
70% 8 12 2002
50% 8 12 2026
40% 10 15 1714
30% 10 15 1639
Entity #3: Chains: E - 5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*T)-3' dna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3' dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: G - 5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*T)-3' dna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: H - 5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3' dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.