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An Information Portal to 105097 Biological Macromolecular Structures

Detailed structural insight into the DNA cleavage complex of type IIA topoisomerases (cleaved form)
Sequence Clustering and Redundancy Reduction Results
3KSA
Sequence Clusters for the Sequence Entities in PDB 3KSA
Entity #1: Chains: A,B - DNA topoisomerase 4 subunit A protein, length: 496 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 14 1037
95% 9 14 1425
90% 9 14 1454
70% 9 14 1484
50% 17 25 745
40% 17 25 770
30% 17 25 767
Entity #2: Chains: C,D - DNA topoisomerase 4 subunit B protein, length: 268 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 12 1362
95% 8 12 1835
90% 8 12 1870
70% 8 12 1883
50% 8 12 1911
40% 10 15 1631
30% 10 15 1564
Entity #3: Chains: E - 5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*T)-3' dna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3' dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: G - 5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*T)-3' dna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: H - 5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3' dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.