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An Information Portal to 105025 Biological Macromolecular Structures

Crystal structure of wild-type HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA
Sequence Clustering and Redundancy Reduction Results
3KLF
Sequence Clusters for the Sequence Entities in PDB 3KLF
Entity #1: Chains: A,E,I,M - Reverse transcriptase/ribonuclease H protein, length: 557 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 6 4983
95% 191 201 62
90% 191 201 65
70% 191 201 79
50% 192 202 117
40% 192 202 140
30% 192 202 162
Entity #2: Chains: B,F,J,N - p51 RT protein, length: 444 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 66 256
95% 185 195 69
90% 185 195 73
70% 185 195 89
50% 186 196 119
40% 186 196 147
30% 186 196 173
Entity #3: Chains: C,G,K,O - DNA (5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D,H,L,P - DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(2DA))-3') dna, length: 21 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.