Sequence Similarity Clusters for the Entities in PDB 3KLF

Entity #1 | Chains: A,E,I,M
Reverse transcriptase/ribonuclease H protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 6025
95 % 217 228 103
90 % 217 228 107
70 % 217 228 120
50 % 218 229 147
40 % 218 229 163
30 % 218 229 182
Entity #2 | Chains: B,F,J,N
p51 RT protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 85 217
95 % 211 222 110
90 % 211 222 115
70 % 211 222 132
50 % 212 223 158
40 % 212 223 174
30 % 212 223 189
Entity #3 | Chains: C,G,K,O
DNA (5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,H,L,P
DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(2DA))-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.