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Crystal structure of wild-type HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA
Sequence Clustering and Redundancy Reduction Results
3KLF
Sequence Clusters for the Sequence Entities in PDB 3KLF
Entity #1: Chains: A,E,I,M - Reverse transcriptase/ribonuclease H protein, length: 557 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 6 5396
95% 200 210 78
90% 200 210 82
70% 200 210 103
50% 201 211 142
40% 201 211 155
30% 201 211 171
Entity #2: Chains: B,F,J,N - p51 RT protein, length: 444 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 74 237
95% 194 204 87
90% 194 204 92
70% 194 204 113
50% 195 205 148
40% 195 205 162
30% 195 205 180
Entity #3: Chains: C,G,K,O - DNA (5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D,H,L,P - DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(2DA))-3') dna, length: 21 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.