Sequence Similarity Clusters for the Entities in PDB 3JWO

Entity #1 | Chains: A
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48572
95 % 2 2 19482
90 % 2 2 18948
70 % 109 121 167
50 % 109 121 199
40 % 109 121 217
30 % 110 124 223
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 34 730
95 % 32 39 848
90 % 32 39 883
70 % 32 39 924
50 % 32 39 972
40 % 32 39 987
30 % 32 39 982
Entity #3 | Chains: L
FAB 48D LIGHT CHAIN protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13610
95 % 124 143 70
90 % 478 518 3
70 % 1546 1639 3
50 % 3740 3985 1
40 % 3741 3986 1
30 % 4439 4715 1
Entity #4 | Chains: H
FAB 48D Heavy CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13559
95 % 4 5 8236
90 % 4 5 8170
70 % 1815 1932 1
50 % 3741 3985 1
40 % 3742 3986 1
30 % 4440 4715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.