Sequence Similarity Clusters for the Entities in PDB 3JWO

Entity #1 | Chains: A
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51606
95 % 2 2 20677
90 % 2 2 20113
70 % 114 126 179
50 % 114 126 216
40 % 114 126 238
30 % 115 129 241
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 35 744
95 % 32 40 897
90 % 32 40 928
70 % 32 40 954
50 % 32 40 988
40 % 32 40 1006
30 % 32 40 981
Entity #3 | Chains: L
FAB 48D LIGHT CHAIN protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 14526
95 % 135 154 72
90 % 596 644 3
70 % 1667 1775 2
50 % 4080 4367 1
40 % 4080 4367 1
30 % 4830 5151 1
Entity #4 | Chains: H
FAB 48D Heavy CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 14472
95 % 4 5 8787
90 % 4 5 8703
70 % 1973 2111 1
50 % 4081 4367 1
40 % 4081 4367 1
30 % 4831 5151 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.