Sequence Similarity Clusters for the Entities in PDB 3JWO

Entity #1 | Chains: A
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47573
95 % 2 2 19072
90 % 2 2 18559
70 % 108 120 165
50 % 108 120 196
40 % 108 120 212
30 % 109 123 222
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 34 715
95 % 32 39 812
90 % 32 39 851
70 % 32 39 900
50 % 32 39 947
40 % 32 39 968
30 % 32 39 962
Entity #3 | Chains: L
FAB 48D LIGHT CHAIN protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13262
95 % 114 131 78
90 % 444 482 4
70 % 1494 1583 3
50 % 3616 3846 1
40 % 3617 3847 1
30 % 4313 4574 1
Entity #4 | Chains: H
FAB 48D Heavy CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13213
95 % 4 5 8036
90 % 4 5 7972
70 % 1756 1866 1
50 % 3617 3846 1
40 % 3618 3847 1
30 % 4314 4574 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.