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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWO
Sequence Clusters for the Sequence Entities in PDB 3JWO
Entity #1: Chains: A - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43051
95% 2 2 17181
90% 2 2 16749
70% 59 63 332
50% 59 63 365
40% 59 63 389
30% 59 63 396
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 30 852
95% 31 35 965
90% 31 35 985
70% 31 35 1015
50% 31 35 1057
40% 31 35 1085
30% 31 35 1061
Entity #3: Chains: L - FAB 48D LIGHT CHAIN protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11870
95% 100 113 84
90% 365 389 5
70% 1299 1366 3
50% 3086 3252 1
40% 3087 3253 1
30% 3648 3839 1
Entity #4: Chains: H - FAB 48D Heavy CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11826
95% 4 4 11280
90% 4 4 11109
70% 1491 1569 2
50% 3087 3252 1
40% 3088 3253 1
30% 3649 3839 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.