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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWO
Sequence Clusters for the Sequence Entities in PDB 3JWO
Entity #1: Chains: A - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44000
95% 2 2 17599
90% 2 2 17146
70% 70 75 265
50% 70 75 303
40% 70 75 333
30% 70 75 343
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 30 876
95% 31 35 993
90% 31 35 1014
70% 31 35 1043
50% 31 35 1088
40% 31 35 1112
30% 31 35 1085
Entity #3: Chains: L - FAB 48D LIGHT CHAIN protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 12185
95% 106 121 72
90% 397 425 4
70% 1362 1434 3
50% 3247 3425 1
40% 3248 3426 1
30% 3840 4043 1
Entity #4: Chains: H - FAB 48D Heavy CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 12140
95% 4 4 11545
90% 4 4 11365
70% 1572 1656 1
50% 3248 3425 1
40% 3249 3426 1
30% 3841 4043 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.