Sequence Similarity Clusters for the Entities in PDB 3JWO

Entity #1 | Chains: A
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50857
95 % 2 2 20397
90 % 2 2 19848
70 % 113 125 172
50 % 113 125 211
40 % 113 125 234
30 % 114 128 239
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 35 717
95 % 32 40 859
90 % 32 40 891
70 % 32 40 922
50 % 32 40 966
40 % 32 40 989
30 % 32 40 971
Entity #3 | Chains: L
FAB 48D LIGHT CHAIN protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 14305
95 % 134 153 69
90 % 585 632 3
70 % 1646 1752 2
50 % 3989 4272 1
40 % 3989 4272 1
30 % 4722 5038 1
Entity #4 | Chains: H
FAB 48D Heavy CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 14251
95 % 4 5 8638
90 % 4 5 8565
70 % 1930 2066 1
50 % 3990 4272 1
40 % 3990 4272 1
30 % 4723 5038 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.