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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWO
Sequence Clusters for the Sequence Entities in PDB 3JWO
Entity #1: Chains: A - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 40745
95% 2 2 16398
90% 2 2 15993
70% 53 56 372
50% 53 56 408
40% 53 56 434
30% 53 56 451
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 28 925
95% 30 33 985
90% 30 33 1009
70% 30 33 1041
50% 30 33 1110
40% 30 33 1137
30% 30 33 1124
Entity #3: Chains: L - FAB 48D LIGHT CHAIN protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11198
95% 94 105 75
90% 346 366 4
70% 1233 1292 3
50% 2924 3072 1
40% 2925 3073 1
30% 3460 3633 1
Entity #4: Chains: H - FAB 48D Heavy CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11160
95% 4 4 10761
90% 4 4 10602
70% 1412 1481 2
50% 2925 3072 1
40% 2926 3073 1
30% 3461 3633 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.