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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWO
Sequence Clusters for the Sequence Entities in PDB 3JWO
Entity #1: Chains: A - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 40394
95% 2 2 16252
90% 2 2 15854
70% 44 46 430
50% 44 46 476
40% 44 46 507
30% 44 46 518
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 27 953
95% 30 32 1027
90% 30 32 1049
70% 30 32 1080
50% 30 32 1145
40% 30 32 1178
30% 30 32 1163
Entity #3: Chains: L - FAB 48D LIGHT CHAIN protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11104
95% 94 105 75
90% 341 360 4
70% 1217 1274 3
50% 2887 3031 1
40% 2888 3032 1
30% 3421 3590 1
Entity #4: Chains: H - FAB 48D Heavy CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11066
95% 4 4 10667
90% 4 4 10509
70% 1394 1461 2
50% 2888 3031 1
40% 2889 3032 1
30% 3422 3590 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.