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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWO
Sequence Clusters for the Sequence Entities in PDB 3JWO
Entity #1: Chains: A - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 40595
95% 2 2 16335
90% 2 2 15933
70% 53 56 372
50% 53 56 407
40% 53 56 434
30% 53 56 449
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 28 921
95% 30 33 979
90% 30 33 1003
70% 30 33 1034
50% 30 33 1102
40% 30 33 1131
30% 30 33 1120
Entity #3: Chains: L - FAB 48D LIGHT CHAIN protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11158
95% 94 105 75
90% 345 365 4
70% 1232 1291 3
50% 2922 3070 1
40% 2923 3071 1
30% 3456 3629 1
Entity #4: Chains: H - FAB 48D Heavy CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11121
95% 4 4 10722
90% 4 4 10564
70% 1411 1480 2
50% 2923 3070 1
40% 2924 3071 1
30% 3457 3629 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.