Sequence Similarity Clusters for the Entities in PDB 3JWO

Entity #1 | Chains: A
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47626
95 % 2 2 19100
90 % 2 2 18586
70 % 108 120 165
50 % 108 120 196
40 % 108 120 212
30 % 109 123 222
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 34 719
95 % 32 39 816
90 % 32 39 853
70 % 32 39 902
50 % 32 39 947
40 % 32 39 969
30 % 32 39 963
Entity #3 | Chains: L
FAB 48D LIGHT CHAIN protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13282
95 % 116 133 74
90 % 447 485 4
70 % 1498 1587 3
50 % 3628 3858 1
40 % 3629 3859 1
30 % 4326 4587 1
Entity #4 | Chains: H
FAB 48D Heavy CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13233
95 % 4 5 8044
90 % 4 5 7980
70 % 1762 1872 1
50 % 3629 3858 1
40 % 3630 3859 1
30 % 4327 4587 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.