Sequence Similarity Clusters for the Entities in PDB 3JWO

Entity #1 | Chains: A
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48265
95 % 2 2 19360
90 % 2 2 18830
70 % 109 121 166
50 % 109 121 198
40 % 109 121 214
30 % 110 124 223
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 34 727
95 % 32 39 843
90 % 32 39 877
70 % 32 39 918
50 % 32 39 961
40 % 32 39 981
30 % 32 39 976
Entity #3 | Chains: L
FAB 48D LIGHT CHAIN protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13506
95 % 120 137 71
90 % 467 505 3
70 % 1529 1620 3
50 % 3702 3940 1
40 % 3703 3941 1
30 % 4400 4669 1
Entity #4 | Chains: H
FAB 48D Heavy CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13455
95 % 4 5 8167
90 % 4 5 8103
70 % 1798 1912 1
50 % 3703 3940 1
40 % 3704 3941 1
30 % 4401 4669 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.