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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWO
Sequence Clusters for the Sequence Entities in PDB 3JWO
Entity #1: Chains: A - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42856
95% 2 2 17133
90% 2 2 16695
70% 53 57 358
50% 53 57 398
40% 53 57 421
30% 53 57 427
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 30 851
95% 31 35 961
90% 31 35 981
70% 31 35 1011
50% 31 35 1053
40% 31 35 1080
30% 31 35 1057
Entity #3: Chains: L - FAB 48D LIGHT CHAIN protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11839
95% 100 113 83
90% 365 389 5
70% 1291 1358 3
50% 3070 3236 1
40% 3071 3237 1
30% 3630 3821 1
Entity #4: Chains: H - FAB 48D Heavy CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11795
95% 4 4 11253
90% 4 4 11080
70% 1483 1561 2
50% 3071 3236 1
40% 3072 3237 1
30% 3631 3821 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.