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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWO
Sequence Clusters for the Sequence Entities in PDB 3JWO
Entity #1: Chains: A - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41608
95% 2 2 16695
90% 2 2 16272
70% 53 57 349
50% 53 57 385
40% 53 57 406
30% 53 57 415
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 29 856
95% 31 34 961
90% 31 34 979
70% 31 34 1007
50% 31 34 1057
40% 31 34 1086
30% 31 34 1063
Entity #3: Chains: L - FAB 48D LIGHT CHAIN protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11442
95% 96 107 74
90% 353 374 5
70% 1256 1317 3
50% 2982 3136 1
40% 2983 3137 1
30% 3534 3713 1
Entity #4: Chains: H - FAB 48D Heavy CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11401
95% 4 4 10966
90% 4 4 10800
70% 1439 1511 2
50% 2983 3136 1
40% 2984 3137 1
30% 3535 3713 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.