Sequence Similarity Clusters for the Entities in PDB 3JWO

Entity #1 | Chains: A
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49852
95 % 2 2 20016
90 % 2 2 19474
70 % 113 125 168
50 % 113 125 201
40 % 113 125 221
30 % 114 128 228
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 35 695
95 % 32 40 830
90 % 32 40 863
70 % 32 40 901
50 % 32 40 943
40 % 32 40 963
30 % 32 40 950
Entity #3 | Chains: L
FAB 48D LIGHT CHAIN protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 14033
95 % 133 152 70
90 % 575 618 3
70 % 1612 1710 2
50 % 3899 4166 1
40 % 3900 4167 1
30 % 4615 4915 1
Entity #4 | Chains: H
FAB 48D Heavy CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13984
95 % 4 5 8492
90 % 4 5 8416
70 % 1888 2016 1
50 % 3900 4166 1
40 % 3901 4167 1
30 % 4616 4915 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.