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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWO
Sequence Clusters for the Sequence Entities in PDB 3JWO
Entity #1: Chains: A - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42307
95% 2 2 16968
90% 2 2 16534
70% 53 57 354
50% 53 57 393
40% 53 57 415
30% 53 57 421
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 30 843
95% 31 35 945
90% 31 35 964
70% 31 35 997
50% 31 35 1042
40% 31 35 1067
30% 31 35 1046
Entity #3: Chains: L - FAB 48D LIGHT CHAIN protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11681
95% 97 108 88
90% 357 379 5
70% 1273 1337 3
50% 3024 3184 1
40% 3025 3185 1
30% 3582 3767 1
Entity #4: Chains: H - FAB 48D Heavy CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11638
95% 4 4 11145
90% 4 4 10974
70% 1460 1535 2
50% 3025 3184 1
40% 3026 3185 1
30% 3583 3767 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.