Sequence Similarity Clusters for the Entities in PDB 3JWO

Entity #1 | Chains: A
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53542
95 % 2 2 21585
90 % 2 2 20972
70 % 114 126 178
50 % 114 126 221
40 % 114 126 240
30 % 115 129 248
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 38 699
95 % 32 43 833
90 % 32 43 863
70 % 32 43 895
50 % 32 43 941
40 % 32 43 968
30 % 32 43 940
Entity #3 | Chains: L
FAB 48D LIGHT CHAIN protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 15127
95 % 146 165 69
90 % 644 697 3
70 % 2103 2280 1
50 % 4266 4619 1
40 % 4266 4619 1
30 % 5049 5440 1
Entity #4 | Chains: H
FAB 48D Heavy CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 15065
95 % 4 5 9162
90 % 4 5 9076
70 % 2067 2238 2
50 % 4267 4619 1
40 % 4267 4619 1
30 % 5050 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.