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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWO
Sequence Clusters for the Sequence Entities in PDB 3JWO
Entity #1: Chains: A - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 357 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43354
95% 2 2 17313
90% 2 2 16877
70% 64 69 295
50% 64 69 324
40% 64 69 355
30% 64 69 359
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 30 863
95% 31 35 978
90% 31 35 998
70% 31 35 1026
50% 31 35 1066
40% 31 35 1092
30% 31 35 1070
Entity #3: Chains: L - FAB 48D LIGHT CHAIN protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11970
95% 101 116 80
90% 387 413 4
70% 1322 1391 3
50% 3139 3311 1
40% 3140 3312 1
30% 3724 3921 1
Entity #4: Chains: H - FAB 48D Heavy CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11927
95% 4 4 11364
90% 4 4 11189
70% 1514 1595 2
50% 3140 3311 1
40% 3141 3312 1
30% 3725 3921 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.