Sequence Similarity Clusters for the Entities in PDB 3JWD

Entity #1 | Chains: A,B
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31739
95 % 1 2 20374
90 % 1 2 19823
70 % 68 125 171
50 % 68 125 209
40 % 68 125 232
30 % 68 128 238
Entity #2 | Chains: C,D
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 35 715
95 % 20 40 857
90 % 20 40 889
70 % 20 40 918
50 % 20 40 962
40 % 20 40 986
30 % 20 40 970
Entity #3 | Chains: L,O
FAB 48D LIGHT CHAIN protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 14287
95 % 58 153 69
90 % 342 631 3
70 % 973 1750 2
50 % 2376 4268 1
40 % 2376 4268 1
30 % 2717 5034 1
Entity #4 | Chains: H,P
FAB 48D HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 14233
95 % 2 5 8626
90 % 2 5 8552
70 % 1154 2064 1
50 % 2377 4268 1
40 % 2377 4268 1
30 % 2718 5034 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3HC4 2 L IMMUNOGLOBULIN IGG1 FAB, LIGHT CHAIN 9606
2 5TDN 1 A, C anti-HER2 Fab Light Chain 9606
3 3NCJ 1 L Fab15 Mut8 light chain 9606
4 3HC3 2 L IMMUNOGLOBULIN IGG1 FAB, HEAVY CHAIN 9606
5 3NA9 1 L Fab15 light chain 9606
6 3NAA 1 L Fab15 Mut5 light chain 9606
7 5TDO 1 A, C anti-HER2 Fab Light Chain 9606
8 3P0Y 3 L Fab DL11 light chain 9606
9 3NAC 1 L Fab15 Mut7 light chain 9606
10 5TDP 1 A, C anti-HER2 Fab Light Chain 9606
11 1L7I 1 L chimera of Fab2C4: "humanized" murine monoclonal antibody The chimera consists of the human Ig and the original murine sequence light chain (residues 1-214) 9606
12 3SOB 1 L antibody light chain 9606
13 4KQ3 1 L CNTO3186 light chain Fab 9606
14 3HC0 2 B, L IMMUNOGLOBULIN IGG1 FAB, HEAVY CHAIN 9606
15 5JW5 2 B, L MEDI8852 Light chain 9606
16 2HFF 1 A, L CB2 Fab, light chain 9606
17 1VGE 1 L TR1.9 FAB FAB FRAGMENT OF A HUMAN IGG1 KAPPA AUTOANTIBODY 9606
18 5GGV 1 L light chain 9606
19 2R8S 2 L Fab light chain 10090
20 4HKZ 1 A Trastuzumab light chain 9606
21 4KMT 1 L light chain O12/KAPPA Fab 9606
22 4XTR 3 D, F Antibody Light chain 32630
23 1RZ7 1 L Fab 48d light chain 9606
24 3PGF 3 L SAB Light Chain 9606
25 2QQN 3 L Antibody light chain 9606
26 5CZX 3 D, L 20358 Fab light chain 9606
27 3GRW 2 L Fab light chain 9606
28 4LKC 1 A Fab fragment of PCSK9 antibody 9606
29 4KZD 2 L BL3-6 Fab antibody, light chain 10090
30 4XH2 2 B, D, F, I, K, L Fab Light Chain 9606
31 3PNW 1 A, D, G, J, M, P, S, V FAB light chain 32630
32 4NRX 3 B, E, L m66 Light Chain 9606
33 3HI6 3 L, Y light chain of Fab fragment of AL-57 against alpha L I domain 9606
34 4ZFG 3 L Fragment antigen binding 5A12 light chain 9606
35 2R0L 1 L antibody light chain 32630
36 5GGU 2 B, L light chain 9606
37 3BN9 2 C, E E2 Fab Light Chain 9606
38 3L95 1 A, L anti-NRR1 fab fragment light chain 9606
39 4KZE 2 L BL3-6 Fab antibody, light chain 10090
40 4XVU 3 D, F, J, L Antibody light chain 32630
41 3NAB 1 L Fab15 Mut6 light chain 9606
42 4WV1 3 A, D Fab light chain 9606
43 5EII 2 B, L Fab Light Chain 9606
44 4UB0 2 L IgG1, light chain 9606
45 1FVD 1 A, C IGG1-KAPPA 4D5 FAB (LIGHT CHAIN) 9606
46 1BJ1 1 J, L FAB FRAGMENT HUMANIZED VERSION OF A MONOCLONAL MURINE ANTI-VEGF ANTIBODY 10090
47 4K94 1 L Fab19 heavy chain 9606
48 5E08 2 L Fab Light Chain 9606
49 1CZ8 2 L, X LIGHT CHAIN OF NEUTRALIZING ANTIBODY MUTATED FORM OF A HUMANIZED MURINE ANTIBODY LIGHT CHAIN FAB FRAGMENT 10090
50 4XAK 3 E, L Light chain of neutralizing antibody m336 9606
51 1FVE 1 A, C IGG1-KAPPA 4D5 FAB (LIGHT CHAIN) 9606
52 2H9G 1 A, L Fab BdF1, light chain Fab fragment 9606
53 4G7V 2 L fragment antibody light chain 9606
54 5EU7 3 C, D FAB light chain 9606
55 3FZU 1 D, L immunoglobulin IgG1 Fab, light chain 9606
56 3K2U 4 L Antibody, Fab fragment, Light Chain 9606
57 2HFG 1 L CB3s Fab light chain (kappa) 9606
58 3JWD 3 L, O FAB 48D LIGHT CHAIN 9606
59 4JQI 3 L Fab30 light chain 10090
60 3U30 2 B, E Light chain Fab 9606
61 5I15 1 L FAB LIGHT CHAIN 9606
62 2FJF 1 A, C, E, G, J, L, M, O, Q, S, U, W Light Chain of a VEGF binding Antibody 9606
63 5I1E 1 L FAB LIGHT CHAIN 9606
64 2QQK 3 L Antibody Light Chain 9606
65 4RRP 1 A, B, C, D, E, F Fab antibody, light chain 9606
66 4XGZ 2 B, D, F, I, K, L, N, P, R, T, V, X FAB LIGHT CHAIN 9606
67 1N8Z 1 A Herceptin Fab (antibody) - light chain 10090
68 1TZH 2 A, L Fab YADS1 Light Chain 10090
69 5BO1 3 L, M Fab light chain 9606
70 4M6O 1 L CNTO7309 light chain 9606
71 4DVR 2 L Fab 48d Light chain 9606
72 4XWO 3 D, F, J, L, P, R, V, X Antibody light chain 32630
73 4ZFF 2 B, L Fragment antigen binding (Fab) 5A12 Light chain 9606
74 3HI5 2 L light chain of Fab fragment of AL-57 against alpha L I domain 9606
75 3DVG 1 A Human IgG1 fab fragment light chain 9606
76 2FGW 1 L H52 FAB (LIGHT CHAIN) 9606
77 2FJG 2 A, L Fab light chain 9606
78 4DKF 3 L, M FAb2 Light Chain 9606
79 1HEZ 1 A, C KAPPA LIGHT CHAIN OF IG 1-214 9606
80 3EFD 1 L FabL 10090
81 4LF3 1 A, D Fab heavy chain 10090
82 5K59 4 F, L Fab light chain 9606
83 5F3H 2 B, D, F, H humanized RK35 antibody light chain 10090
84 4G7Y 2 L Fragment antibody light chain 9606
85 4PY8 4 J antibody 3.1 light chain Fab 9606
86 3DVN 1 A, L Human IgG1 fab fragment light chain 9606
87 3UC0 3 L, M Light chain, monoclonal antibody 5H2 Fab 9598
88 4NNP 3 L, Y Light chain of antagonistic fab fragment 9606
89 4ERS 1 L Fab light chain 9606
90 1DEE 1 A, C, E IGM RF 2A2 FAB LIGHT CHAIN 9606
91 2WUC 5 L FAB FRAGMENT FAB40.DELTATRP LIGHT CHAIN 9606
92 4PY7 2 B, J antibody 3.1 light chain Fab 9606
93 4K8R 3 C Fab1, light chain 9606
94 1TZI 1 A Fab YADS2 Light Chain 10090
95 4YK4 1 B, Y 641 I-9 VLCL antibody 9606
96 3R1G 3 L FAB of YW412.8.31 antibody light chain 9606
97 2QQL 3 L Antibody Light Chain 9606
98 4MXV 2 E, L, X anti-Lymphotoxin alpha antibody light chain Fab 9606
99 3WD5 2 L Adalimumab Light Chain 9606
100 5GZO 3 D, L Antibody light chain 9606
101 2WUB 4 L, Q FAB FRAGMENT FAB40.DELTATRP LIGHT CHAIN 9606
102 2FJH 2 A, L Fab fragment light chain 9606
103 4K9E 1 L light chain 10090
104 3P0V 1 L, M Fab DL11 light chain 9606
105 3HMX 3 L USTEKINUMAB FAB LIGHT CHAIN 9606
106 4I18 1 B, L antibody light chain Fab 10090
107 3IVK 1 B, L Fab light chain man 10090
108 5I19 1 L FAB LIGHT CHAIN 9606
109 1RZI 1 A, C, E, G, I, K, M, O Fab 47e light chain 9606
110 2R56 2 L, M IgE Fab Fragment, light chain 9606
111 5CZV 3 L Fab 20350 light chain 9606
112 4P59 3 L MOR09825 Fab fragment light chain 9606
113 5CJO 3 L FAB light chain 10090
114 3N85 2 L Fab37 Light Chain 9606
115 3G6J 3 E, G Fab light chain 9606
116 3HMW 1 L USTEKINUMAB FAB LIGHT CHAIN 9606
117 4DKE 3 L, M FAb1.1 Light Chain 9606
118 4NRY 1 B, L m66 Heavy Chain 9606
119 1S78 2 C, E Pertuzumab Fab light chain 10090
120 4NYL 1 B, D, F, L Adalimumab Light Chain 9606
121 5D1Q 1 A D2-06 Light Chain 9606
122 1ZA3 1 A, L Fab-YSd1 light chain Fab light chain 9606
123 3UAJ 3 D, L Light chain, monoclonal antibody 5H2 Fab 9598
124 4IOF 3 D, F Fab-bound IDE, light chain 10090
125 4M1C 3 D, F Fab-bound IDE, light chain 9606
126 2JIX 1 A, G, L ABT-007 FAB FRAGMENT 9606
127 3ULV 2 L Fab15 light chain 9606
128 4MXW 5 L, V anti-Lymphotoxin alpha antibody light chain Fab 9606
129 5JW3 4 L MEDI8852 light chain 9606
130 5CWS 1 A, G sAB-158 Fab Light Chain 9606
131 2R0K 2 L antibody light chain of Fab58 9606
132 5C8J 2 B, D, F, H Antibody fragment, light chain OBTAINED BY PHAGE DISPLAY FROM A LIBRARY OF HUMAN IGG. ANTIBODY FRAGMENT; THE CDRS ARE COMPLETELY SYNTHETIC 9606
133 4G80 3 B, D, F, H fragment antibody light chain 9606
134 3JWO 3 L FAB 48D LIGHT CHAIN 9606
135 3P11 2 L Fab DL11 light chain 9606
136 3ULU 2 L Fab15 light chain 9606
137 4XI5 3 C Fab-94 light chain 9606
138 4Q5Z 3 J, L, N, P, R, T, V, X IDE-bound Fab, light chain 10090
139 5JW4 4 N, P, T, V, X MEDI8852 light chain 9606
140 5JW4 6 R MEDI8852 light chain 9606
141 2QR0 1 A, E, G, K, M, Q, S, W Fab-Fragment Light Chain 9606
142 3EFF 1 A, C FAB 10090
143 3PJS 1 A, C FAB light chain 10090
144 5DWU 4 L Fab - Light Chain 9606
145 4XMN 6 L Antibody 87 light chain 32630
146 4XMM 8 L Antibody 57 light chain 9606
147 3J70 2 B, N, S monoclonal antibody 17b heavy chain 9606
148 3CM9 3 L, M, N, O Ig alpha-2 chain C region 9606
149 3CHN 1 L, M, N, O Immunoglobulin kappa light chain 9606
150 2QTJ 1 L, M, N, O Kappa light chain IgA1 9606
151 2ESG 1 L, M Immunoglobulin A1 light chain 9606
152 1R70 1 A, C Human IgA2(m1) Light Chain 9606
153 1IGA 2 C, D IGA1 CHAINS A AND B, HEAVY, CHAINS C AND D, LIGHT 9606