Sequence Similarity Clusters for the Entities in PDB 3JWD

Entity #1 | Chains: A,B
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 30238
95 % 1 2 19482
90 % 1 2 18948
70 % 66 121 167
50 % 66 121 199
40 % 66 121 217
30 % 66 124 223
Entity #2 | Chains: C,D
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 34 730
95 % 20 39 848
90 % 20 39 883
70 % 20 39 924
50 % 20 39 972
40 % 20 39 987
30 % 20 39 982
Entity #3 | Chains: L,O
FAB 48D LIGHT CHAIN protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 13610
95 % 50 143 70
90 % 269 518 3
70 % 907 1639 3
50 % 2211 3985 1
40 % 2212 3986 1
30 % 2532 4715 1
Entity #4 | Chains: H,P
FAB 48D HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 13559
95 % 2 5 8236
90 % 2 5 8170
70 % 1077 1932 1
50 % 2212 3985 1
40 % 2213 3986 1
30 % 2533 4715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4H8W 4 C T-cell surface glycoprotein CD4 9606
2 2NXY 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
3 2NY2 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
4 1CDY 1 A T-CELL SURFACE GLYCOPROTEIN CD4 D1D2 FRAGMENT 9606
5 2NY4 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
6 2NY3 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
7 2NY1 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
8 2NXZ 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
9 3O2D 3 A T-cell surface glycoprotein CD4 UNP residues 26-207 9606
10 3CD4 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
11 2NY0 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
12 3S5L 4 G, H T-cell surface glycoprotein CD4 CD4 9606
13 1CDH 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
14 1CDU 1 A T-CELL SURFACE GLYCOPROTEIN CD4 D1D2 FRAGMENT 9606
15 1CDJ 1 A T-CELL SURFACE GLYCOPROTEIN CD4 WILD TYPE, 110K FORM D1D2 FRAGMENT 9606
16 2NY5 2 C T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
17 1RZJ 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
18 1GC1 2 C CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
19 1G9M 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
20 3JWD 2 C, D T-cell surface glycoprotein CD4 9606
21 3S4S 4 G, H T-cell surface glycoprotein CD4 UNP residues 26-203 9606
22 1CDI 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
23 2NY6 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
24 1RZK 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
25 1G9N 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
26 2QAD 2 B, F T-cell surface glycoprotein CD4 D1D2, IG-LIKE V-TYPE AND IG-LIKE C2-TYPE 1 DOMAINS 9606
27 5CAY 2 B T-cell surface glycoprotein CD4 domains 1 and 2 (UNP residues 26-208) 9606
28 4P9H 1 C T-cell surface glycoprotein CD4 CD4 D1D2 9606
29 4R2G 2 B, F, H, L T-cell surface glycoprotein CD4 9606
30 4JM2 6 F T-cell surface glycoprotein CD4 Ig-like V-type and C2-type 1 domains (UNP residues 26-208) 9606
31 3LQA 1 C T-cell surface glycoprotein CD4 9606
32 3JWO 2 C T-cell surface glycoprotein CD4 9606
33 2B4C 2 C T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
34 4RQS 1 B 2-domain CD4 10029
35 4R4H 2 B T-cell surface glycoprotein CD4 UNP residues 26-203 9606
36 1JL4 4 D T-CELL SURFACE GLYCOPROTEIN CD4 9606
37 5A8H 2 B, H, N T-CELL SURFACE GLYCOPROTEIN CD4 SOLUBLE CD4 D1-D2 DOMAINS, RESIDUES26-208 9606
38 5A7X 2 B, F, J T-CELL SURFACE GLYCOPROTEIN CD4 9606
39 3J70 3 C, O, T T-cell surface glycoprotein CD4 UNP residues 26-208 9606