Sequence Similarity Clusters for the Entities in PDB 3JWD

Entity #1 | Chains: A,B
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 33604
95 % 1 2 21585
90 % 1 2 20972
70 % 69 126 178
50 % 69 126 221
40 % 69 126 240
30 % 69 129 248
Entity #2 | Chains: C,D
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 38 699
95 % 20 43 833
90 % 20 43 863
70 % 20 43 895
50 % 20 43 941
40 % 20 43 968
30 % 20 43 940
Entity #3 | Chains: L,O
FAB 48D LIGHT CHAIN protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 15127
95 % 63 165 69
90 % 378 697 3
70 % 1242 2280 1
50 % 2539 4619 1
40 % 2539 4619 1
30 % 2911 5440 1
Entity #4 | Chains: H,P
FAB 48D HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 15065
95 % 2 5 9162
90 % 2 5 9076
70 % 1234 2238 2
50 % 2540 4619 1
40 % 2540 4619 1
30 % 2912 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4H8W 4 C T-cell surface glycoprotein CD4 9606
2 2NXY 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
3 2NY2 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
4 2NY4 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
5 2NY3 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
6 2NY1 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
7 2NXZ 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
8 3O2D 3 A T-cell surface glycoprotein CD4 UNP residues 26-207 9606
9 3CD4 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
10 2NY0 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
11 1CDH 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
12 1CDJ 1 A T-CELL SURFACE GLYCOPROTEIN CD4 WILD TYPE, 110K FORM D1D2 FRAGMENT 9606
13 2NY5 2 C T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
14 1RZJ 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
15 1GC1 2 C CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
16 1G9M 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
17 3JWD 2 C, D T-cell surface glycoprotein CD4 9606
18 1CDI 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
19 2NY6 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
20 1RZK 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
21 1G9N 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
22 2QAD 2 B, F T-cell surface glycoprotein CD4 D1D2, IG-LIKE V-TYPE AND IG-LIKE C2-TYPE 1 DOMAINS 9606
23 5CAY 2 B T-cell surface glycoprotein CD4 domains 1 and 2 (UNP residues 26-208) 9606
24 4R2G 2 B, F, H, L T-cell surface glycoprotein CD4 9606
25 4JM2 6 F T-cell surface glycoprotein CD4 Ig-like V-type and C2-type 1 domains (UNP residues 26-208) 9606
26 3LQA 1 C T-cell surface glycoprotein CD4 9606
27 3JWO 2 C T-cell surface glycoprotein CD4 9606
28 2B4C 2 C T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
29 4RQS 1 B 2-domain CD4 9606
30 4R4H 2 B T-cell surface glycoprotein CD4 UNP residues 26-203 9606
31 1JL4 4 D T-CELL SURFACE GLYCOPROTEIN CD4 9606
32 5VN3 4 C, E, F T-cell surface glycoprotein CD4 9606
33 5THR 3 G, H, I T-cell surface glycoprotein CD4 UNP residues 26-207 9606
34 3JCB 4 D T-cell surface glycoprotein CD4 UNP residues 26-200 9606
35 3JCC 4 D T-cell surface glycoprotein CD4 UNP residues 26-200 9606
36 5A8H 2 B, H, N T-CELL SURFACE GLYCOPROTEIN CD4 SOLUBLE CD4 D1-D2 DOMAINS, RESIDUES26-208 9606
37 5A7X 2 B, F, J T-CELL SURFACE GLYCOPROTEIN CD4 9606
38 3J70 3 C, O, T T-cell surface glycoprotein CD4 UNP residues 26-208 9606