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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWD
Cluster # 17773 Members. Sequence cutoff: 95% Cluster size: 2 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3JWD 1 A, B HIV-1 GP120 ENVELOPE GLYCOPROTEIN 11676  
2 3JWO 1 A HIV-1 GP120 ENVELOPE GLYCOPROTEIN 9606  
 
Sequence Clusters for the Sequence Entities in PDB 3JWD
Entity #1: Chains: A,B - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 27471
95% 1 2 17773
90% 1 2 17301
70% 46 75 274
50% 46 75 308
40% 46 75 337
30% 46 75 347
Entity #2: Chains: C,D - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 33 683
95% 20 38 739
90% 20 38 780
70% 20 38 822
50% 20 38 893
40% 20 38 922
30% 20 38 915
Entity #3: Chains: L,O - FAB 48D LIGHT CHAIN protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 12305
95% 47 126 68
90% 231 431 4
70% 801 1445 3
50% 1936 3457 1
40% 1937 3458 1
30% 2187 4083 1
Entity #4: Chains: H,P - FAB 48D HEAVY CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 12261
95% 2 5 7488
90% 2 5 7427
70% 943 1672 1
50% 1937 3457 1
40% 1938 3458 1
30% 2188 4083 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.