Sequence Similarity Clusters for the Entities in PDB 3JWD

Entity #1 | Chains: A,B
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29587
95 % 1 2 19072
90 % 1 2 18559
70 % 66 120 165
50 % 66 120 196
40 % 66 120 212
30 % 66 123 222
Entity #2 | Chains: C,D
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 34 715
95 % 20 39 812
90 % 20 39 851
70 % 20 39 900
50 % 20 39 947
40 % 20 39 968
30 % 20 39 962
Entity #3 | Chains: L,O
FAB 48D LIGHT CHAIN protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 13262
95 % 48 131 78
90 % 255 482 4
70 % 878 1583 3
50 % 2142 3846 1
40 % 2143 3847 1
30 % 2462 4574 1
Entity #4 | Chains: H,P
FAB 48D HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 13213
95 % 2 5 8036
90 % 2 5 7972
70 % 1045 1866 1
50 % 2143 3846 1
40 % 2144 3847 1
30 % 2463 4574 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3JWD 1 A, B HIV-1 GP120 ENVELOPE GLYCOPROTEIN 11676