Sequence Similarity Clusters for the Entities in PDB 3JWD

Entity #1 | Chains: A,B
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31068
95 % 1 2 19962
90 % 1 2 19421
70 % 68 125 168
50 % 68 125 201
40 % 68 125 221
30 % 68 128 228
Entity #2 | Chains: C,D
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 35 694
95 % 20 40 827
90 % 20 40 860
70 % 20 40 901
50 % 20 40 942
40 % 20 40 963
30 % 20 40 949
Entity #3 | Chains: L,O
FAB 48D LIGHT CHAIN protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 14007
95 % 55 149 70
90 % 335 613 3
70 % 951 1704 2
50 % 2319 4154 1
40 % 2319 4155 1
30 % 2645 4901 1
Entity #4 | Chains: H,P
FAB 48D HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 13958
95 % 2 5 8475
90 % 2 5 8400
70 % 1127 2010 1
50 % 2320 4154 1
40 % 2320 4155 1
30 % 2646 4901 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3JWD 1 A, B HIV-1 GP120 ENVELOPE GLYCOPROTEIN 11676