Sequence Similarity Clusters for the Entities in PDB 3JWD

Entity #1 | Chains: A,B
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 30286
95 % 1 2 19502
90 % 1 2 18965
70 % 66 121 167
50 % 66 121 199
40 % 66 121 218
30 % 66 124 223
Entity #2 | Chains: C,D
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 34 731
95 % 20 39 854
90 % 20 39 886
70 % 20 39 926
50 % 20 39 973
40 % 20 39 988
30 % 20 39 983
Entity #3 | Chains: L,O
FAB 48D LIGHT CHAIN protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 13630
95 % 50 143 70
90 % 317 582 3
70 % 909 1642 3
50 % 2221 3997 1
40 % 2222 3998 1
30 % 2542 4727 1
Entity #4 | Chains: H,P
FAB 48D HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 13579
95 % 2 5 8246
90 % 2 5 8176
70 % 1082 1938 1
50 % 2222 3997 1
40 % 2223 3998 1
30 % 2543 4727 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3JWD 1 A, B HIV-1 GP120 ENVELOPE GLYCOPROTEIN 11676