Sequence Similarity Clusters for the Entities in PDB 3JWD

Entity #1 | Chains: A,B
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29347
95 % 1 2 18928
90 % 1 2 18418
70 % 66 118 167
50 % 66 118 198
40 % 66 118 214
30 % 66 121 225
Entity #2 | Chains: C,D
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 34 702
95 % 20 39 782
90 % 20 39 818
70 % 20 39 864
50 % 20 39 928
40 % 20 39 955
30 % 20 39 950
Entity #3 | Chains: L,O
FAB 48D LIGHT CHAIN protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 13127
95 % 48 131 73
90 % 252 475 4
70 % 869 1565 3
50 % 2123 3804 1
40 % 2124 3805 1
30 % 2427 4512 1
Entity #4 | Chains: H,P
FAB 48D HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 13078
95 % 2 5 7949
90 % 2 5 7888
70 % 1036 1846 1
50 % 2124 3804 1
40 % 2125 3805 1
30 % 2428 4512 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3JWD 1 A, B HIV-1 GP120 ENVELOPE GLYCOPROTEIN 11676