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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWD
Cluster # 26444 Members. Sequence cutoff: 100% Cluster size: 1 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3JWD 1 A, B HIV-1 GP120 ENVELOPE GLYCOPROTEIN 11676  
 
Sequence Clusters for the Sequence Entities in PDB 3JWD
Entity #1: Chains: A,B - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 26444
95% 1 2 17133
90% 1 2 16695
70% 37 57 358
50% 37 57 398
40% 37 57 421
30% 37 57 427
Entity #2: Chains: C,D - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 30 851
95% 20 35 961
90% 20 35 981
70% 20 35 1011
50% 20 35 1053
40% 20 35 1080
30% 20 35 1057
Entity #3: Chains: L,O - FAB 48D LIGHT CHAIN protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11839
95% 43 113 83
90% 210 389 5
70% 765 1358 3
50% 1833 3236 1
40% 1834 3237 1
30% 2074 3821 1
Entity #4: Chains: H,P - FAB 48D HEAVY CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11795
95% 2 4 11253
90% 2 4 11080
70% 890 1561 2
50% 1834 3236 1
40% 1835 3237 1
30% 2075 3821 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.