Sequence Similarity Clusters for the Entities in PDB 3JWD

Entity #1 | Chains: A,B
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31786
95 % 1 2 20397
90 % 1 2 19848
70 % 68 125 172
50 % 68 125 211
40 % 68 125 234
30 % 68 128 239
Entity #2 | Chains: C,D
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 35 717
95 % 20 40 859
90 % 20 40 891
70 % 20 40 922
50 % 20 40 966
40 % 20 40 989
30 % 20 40 971
Entity #3 | Chains: L,O
FAB 48D LIGHT CHAIN protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 14305
95 % 58 153 69
90 % 342 632 3
70 % 973 1752 2
50 % 2376 4272 1
40 % 2376 4272 1
30 % 2717 5038 1
Entity #4 | Chains: H,P
FAB 48D HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 14251
95 % 2 5 8638
90 % 2 5 8565
70 % 1154 2066 1
50 % 2377 4272 1
40 % 2377 4272 1
30 % 2718 5038 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3JWD 1 A, B HIV-1 GP120 ENVELOPE GLYCOPROTEIN 11676