Sequence Similarity Clusters for the Entities in PDB 3JWD

Entity #1 | Chains: A,B
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 30504
95 % 1 2 19619
90 % 1 2 19082
70 % 66 122 167
50 % 66 122 198
40 % 66 122 214
30 % 66 125 226
Entity #2 | Chains: C,D
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 34 734
95 % 20 39 855
90 % 20 39 889
70 % 20 39 930
50 % 20 39 979
40 % 20 39 994
30 % 20 39 986
Entity #3 | Chains: L,O
FAB 48D LIGHT CHAIN protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 13715
95 % 51 144 70
90 % 318 585 3
70 % 913 1648 3
50 % 2230 4012 1
40 % 2231 4014 1
30 % 2555 4750 1
Entity #4 | Chains: H,P
FAB 48D HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 13664
95 % 2 5 8293
90 % 2 5 8225
70 % 1086 1945 1
50 % 2231 4012 1
40 % 2232 4014 1
30 % 2556 4750 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3JWD 1 A, B HIV-1 GP120 ENVELOPE GLYCOPROTEIN 11676