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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWD
Sequence Clusters for the Sequence Entities in PDB 3JWD
Entity #1: Chains: A,B - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 25090
95% 1 2 16335
90% 1 2 15933
70% 37 56 372
50% 37 56 407
40% 37 56 434
30% 37 56 449
Entity #2: Chains: C,D - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 28 921
95% 20 33 979
90% 20 33 1003
70% 20 33 1034
50% 20 33 1102
40% 20 33 1131
30% 20 33 1120
Entity #3: Chains: L,O - FAB 48D LIGHT CHAIN protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11158
95% 41 105 75
90% 199 365 4
70% 734 1291 3
50% 1755 3070 1
40% 1756 3071 1
30% 1987 3629 1
Entity #4: Chains: H,P - FAB 48D HEAVY CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11121
95% 2 4 10722
90% 2 4 10564
70% 852 1480 2
50% 1756 3070 1
40% 1757 3071 1
30% 1988 3629 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.