Sequence Similarity Clusters for the Entities in PDB 3JWD

Entity #1 | Chains: A,B
HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 32514
95 % 1 2 20833
90 % 1 2 20262
70 % 69 126 179
50 % 69 126 218
40 % 69 126 239
30 % 69 129 243
Entity #2 | Chains: C,D
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 37 712
95 % 20 42 846
90 % 20 42 881
70 % 20 42 912
50 % 20 42 964
40 % 20 42 984
30 % 20 42 960
Entity #3 | Chains: L,O
FAB 48D LIGHT CHAIN protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 14633
95 % 59 156 72
90 % 362 665 3
70 % 1001 1803 2
50 % 2467 4435 1
40 % 2467 4435 1
30 % 2826 5225 1
Entity #4 | Chains: H,P
FAB 48D HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 14577
95 % 2 5 8855
90 % 2 5 8768
70 % 1198 2145 1
50 % 2468 4435 1
40 % 2468 4435 1
30 % 2827 5225 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.