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An Information Portal to 105025 Biological Macromolecular Structures

Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWD
Sequence Clusters for the Sequence Entities in PDB 3JWD
Entity #1: Chains: A,B - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 25505
95% 1 2 16586
90% 1 2 16174
70% 37 57 346
50% 37 57 383
40% 37 57 404
30% 37 57 413
Entity #2: Chains: C,D - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 29 851
95% 20 34 952
90% 20 34 971
70% 20 34 999
50% 20 34 1048
40% 20 34 1076
30% 20 34 1054
Entity #3: Chains: L,O - FAB 48D LIGHT CHAIN protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11352
95% 41 105 76
90% 201 369 5
70% 739 1301 3
50% 1767 3102 1
40% 1768 3103 1
30% 2002 3671 1
Entity #4: Chains: H,P - FAB 48D HEAVY CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11312
95% 2 4 10890
90% 2 4 10726
70% 858 1496 2
50% 1768 3102 1
40% 1769 3103 1
30% 2003 3671 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.