POP-OUT | CLOSE
 
Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWD
Sequence Clusters for the Sequence Entities in PDB 3JWD
Entity #1: Chains: A,B - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 25184
95% 1 2 16398
90% 1 2 15993
70% 37 56 372
50% 37 56 408
40% 37 56 434
30% 37 56 451
Entity #2: Chains: C,D - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 28 925
95% 20 33 985
90% 20 33 1009
70% 20 33 1041
50% 20 33 1110
40% 20 33 1137
30% 20 33 1124
Entity #3: Chains: L,O - FAB 48D LIGHT CHAIN protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11198
95% 41 105 75
90% 199 366 4
70% 734 1292 3
50% 1755 3072 1
40% 1756 3073 1
30% 1989 3633 1
Entity #4: Chains: H,P - FAB 48D HEAVY CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11160
95% 2 4 10761
90% 2 4 10602
70% 852 1481 2
50% 1756 3072 1
40% 1757 3073 1
30% 1990 3633 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.