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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWD
Sequence Clusters for the Sequence Entities in PDB 3JWD
Entity #1: Chains: A,B - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 26908
95% 1 2 17401
90% 1 2 16964
70% 44 69 297
50% 44 69 324
40% 44 69 356
30% 44 69 359
Entity #2: Chains: C,D - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 30 865
95% 20 35 982
90% 20 35 1003
70% 20 35 1034
50% 20 35 1076
40% 20 35 1096
30% 20 35 1073
Entity #3: Chains: L,O - FAB 48D LIGHT CHAIN protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 12033
95% 43 116 81
90% 223 414 4
70% 781 1404 3
50% 1874 3339 1
40% 1875 3340 1
30% 2123 3953 1
Entity #4: Chains: H,P - FAB 48D HEAVY CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11989
95% 2 4 11418
90% 2 4 11243
70% 912 1614 2
50% 1875 3339 1
40% 1876 3340 1
30% 2124 3953 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.