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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWD
Sequence Clusters for the Sequence Entities in PDB 3JWD
Entity #1: Chains: A,B - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 25898
95% 1 2 16822
90% 1 2 16394
70% 37 57 349
50% 37 57 388
40% 37 57 408
30% 37 57 418
Entity #2: Chains: C,D - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 30 833
95% 20 35 933
90% 20 35 953
70% 20 35 988
50% 20 35 1036
40% 20 35 1061
30% 20 35 1039
Entity #3: Chains: L,O - FAB 48D LIGHT CHAIN protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11532
95% 41 108 73
90% 203 376 5
70% 752 1330 3
50% 1793 3162 1
40% 1794 3163 1
30% 2032 3739 1
Entity #4: Chains: H,P - FAB 48D HEAVY CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11489
95% 2 4 11045
90% 2 4 10880
70% 870 1524 2
50% 1794 3162 1
40% 1795 3163 1
30% 2033 3739 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.