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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Sequence Clustering and Redundancy Reduction Results
3JWD
Sequence Clusters for the Sequence Entities in PDB 3JWD
Entity #1: Chains: A,B - HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein, length: 379 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 26600
95% 1 2 17222
90% 1 2 16785
70% 41 64 332
50% 41 64 363
40% 41 64 388
30% 41 64 395
Entity #2: Chains: C,D - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 30 857
95% 20 35 968
90% 20 35 988
70% 20 35 1018
50% 20 35 1059
40% 20 35 1086
30% 20 35 1063
Entity #3: Chains: L,O - FAB 48D LIGHT CHAIN protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11901
95% 43 114 80
90% 223 410 4
70% 769 1377 3
50% 1841 3274 1
40% 1842 3275 1
30% 2084 3863 1
Entity #4: Chains: H,P - FAB 48D HEAVY CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11857
95% 2 4 11308
90% 2 4 11135
70% 894 1580 2
50% 1842 3274 1
40% 1843 3275 1
30% 2085 3863 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.