Sequence Similarity Clusters for the Entities in PDB 3JSM

Entity #1 | Chains: T
DNA (5'-D(*A*TP*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(DDG))-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 87 107 254
95 % 225 258 115 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 225 258 119
70 % 225 258 133
50 % 226 259 161
40 % 227 260 172
30 % 227 260 190
Entity #4 | Chains: B
HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 99 118 219
95 % 220 252 120 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 220 252 123
70 % 220 252 140
50 % 222 254 169
40 % 222 254 182
30 % 222 254 201

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures