3J3Y

Atomic-level structure of the entire HIV-1 capsid (186 hexamers + 12 pentamers)


Sequence Similarity Clusters for the Entities in PDB 3J3Y

Entity #1 | Chains: 0,1,10,11,12,13,14,15,16,17,18,19,1A,1B,1C,1D,1E,1F,1G,1H,1I,1J,1K,1L,1M,1N,1O,1P,1Q,1R,1S,1T,1U,1V,1W,1X,1Y,1Z,1a,1b,1c,1d,1e,1f,1g,1h,1i,1j,1k,1l,1m,1n,1o,1p,1q,1r,1s,1t,1u,1v,1w,1x,1y,1z,2,20,21,22,23,24,25,26,27,28,29,2A,2B,2C,2D,2E,2F,2G,2H,2I,2J,2K,2L,2M,2N,2O,2P,2Q,2R,2S,2T,2U,2V,2W,2X,2Y,2Z,2a,2b,2c,2d,2e,2f,2g,2h,2i,2j,2k,2l,2m,2n,2o,2p,2q,2r,2s,2t,2u,2v,2w,2x,2y,2z,3,30,31,32,33,34,35,36,37,38,39,3A,3B,3C,3D,3E,3F,3G,3H,3I,3J,3K,3L,3M,3N,3O,3P,3Q,3R,3S,3T,3U,3V,3W,3X,3Y,3Z,3a,3b,3c,3d,3e,3f,3g,3h,3i,3j,3k,3l,3m,3n,3o,3p,3q,3r,3s,3t,3u,3v,3w,3x,3y,3z,4,40,41,42,43,44,45,46,47,48,49,4A,4B,4C,4D,4E,4F,4G,4H,4I,4J,4K,4L,4M,4N,4O,4P,4Q,4R,4S,4T,4U,4V,4W,4X,4Y,4Z,4a,4b,4c,4d,4e,4f,4g,4h,4i,4j,4k,4l,4m,4n,4o,4p,4q,4r,4s,4t,4u,4v,4w,4x,4y,4z,5,50,51,52,53,54,55,56,57,58,59,5A,5B,5C,5D,5E,5F,5G,5H,5I,5J,5K,5L,5M,5N,5O,5P,5Q,5R,5S,5T,5U,5V,5W,5X,5Y,5Z,5a,5b,5c,5d,5e,5f,5g,5h,5i,5j,5k,5l,5m,5n,5o,5p,5q,5r,5s,5t,5u,5v,5w,5x,5y,5z,6,60,61,62,63,64,65,66,67,68,69,6A,6B,6C,6D,6E,6F,6G,6H,6I,6J,6K,6L,6M,6N,6O,6P,6Q,6R,6S,6T,6U,6V,6W,6X,6Y,6Z,6a,6b,6c,6d,6e,6f,6g,6h,6i,6j,6k,6l,6m,6n,6o,6p,6q,6r,6s,6t,6u,6v,6w,6x,6y,6z,7,70,71,72,73,74,75,76,77,78,79,7A,7B,7C,7D,7E,7F,7G,7H,7I,7J,7K,7L,7M,7N,7O,7P,7Q,7R,7S,7T,7U,7V,7W,7X,7Y,7Z,7a,7b,7c,7d,7e,7f,7g,7h,7i,7j,7k,7l,7m,7n,7o,7p,7q,7r,7s,7t,7u,7v,7w,7x,7y,7z,8,80,81,82,83,84,85,86,87,88,89,8A,8B,8C,8D,8E,8F,8G,8H,8I,8J,8K,8L,8M,8N,8O,8P,8Q,8R,8S,8T,8U,8V,8W,8X,8Y,8Z,8a,8b,8c,8d,8e,8f,8g,8h,8i,8j,8k,8l,8m,8n,8o,8p,8q,8r,8s,8t,8u,8v,8w,8x,8y,8z,9,90,91,92,93,94,95,96,97,98,99,9A,9B,9C,9D,9E,9F,9G,9H,9I,9J,9K,9L,9M,9N,9O,9P,9Q,9R,9S,9T,9U,9V,9W,9X,9Y,9Z,9a,9b,9c,9d,9e,9f,9g,9h,9i,9j,9k,9l,9m,9n,9o,9p,9q,9r,9s,9t,9u,9v,9w,9x,9y,9z,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,a0,a1,a2,a3,a4,a5,a6,a7,a8,a9,aA,aB,aC,aD,aE,aF,aG,aH,aI,aJ,aK,aL,aM,aN,aO,aP,aQ,aR,aS,aT,aU,aV,aW,aX,aY,aZ,aa,ab,ac,ad,ae,af,ag,ah,ai,aj,ak,al,am,an,ao,ap,aq,ar,as,at,au,av,aw,ax,ay,az,b,b0,b1,b2,b3,b4,b5,b6,b7,b8,b9,bA,bB,bC,bD,bE,bF,bG,bH,bI,bJ,bK,bL,bM,bN,bO,bP,bQ,bR,bS,bT,bU,bV,bW,bX,bY,bZ,ba,bb,bc,bd,be,bf,bg,bh,bi,bj,bk,bl,bm,bn,bo,bp,bq,br,bs,bt,bu,bv,bw,bx,by,bz,c,c0,c1,c2,c3,c4,c5,c6,c7,c8,c9,cA,cB,cC,cD,cE,cF,cG,cH,cI,cJ,cK,cL,cM,cN,cO,cP,cQ,cR,cS,cT,cU,cV,cW,cX,cY,cZ,ca,cb,cc,cd,ce,cf,cg,ch,ci,cj,ck,cl,cm,cn,co,cp,cq,cr,cs,ct,cu,cv,cw,cx,cy,cz,d,d0,d1,d2,d3,d4,d5,d6,d7,d8,d9,dA,dB,dC,dD,dE,dF,dG,dH,dI,dJ,dK,dL,dM,dN,dO,dP,dQ,dR,dS,dT,dU,dV,dW,dX,dY,dZ,da,db,dc,dd,de,df,dg,dh,di,dj,dk,dl,dm,dn,do,dp,dq,dr,ds,dt,du,dv,dw,dx,dy,dz,e,e0,e1,e2,e3,e4,e5,e6,e7,e8,e9,eA,eB,eC,eD,eE,eF,eG,eH,eI,eJ,eK,eL,eM,eN,eO,eP,eQ,eR,eS,eT,eU,eV,eW,eX,eY,eZ,ea,eb,ec,ed,ee,ef,eg,eh,ei,ej,ek,el,em,en,eo,ep,eq,er,es,et,eu,ev,ew,ex,ey,ez,f,f0,f1,f2,f3,f4,f5,f6,f7,f8,f9,fA,fB,fC,fD,fE,fF,fG,fH,fI,fJ,fK,fL,fM,fN,fO,fP,fQ,fR,fS,fT,fU,fV,fW,fX,fY,fZ,fa,fb,fc,fd,fe,ff,fg,fh,fi,fj,fk,fl,fm,fn,fo,fp,fq,fr,fs,ft,fu,fv,fw,fx,fy,fz,g,g0,g1,g2,g3,g4,g5,g6,g7,g8,g9,gA,gB,gC,gD,gE,gF,gG,gH,gI,gJ,gK,gL,gM,gN,gO,gP,gQ,gR,gS,gT,gU,gV,gW,gX,gY,gZ,ga,gb,gc,gd,ge,gf,gg,gh,gi,gj,gk,gl,gm,gn,go,gp,gq,gr,gs,gt,gu,gv,gw,gx,gy,gz,h,h0,h1,h2,h3,h4,h5,h6,h7,h8,h9,hA,hB,hC,hD,hE,hF,hG,hH,hI,hJ,hK,hL,hM,hN,hO,hP,hQ,hR,hS,hT,hU,hV,hW,hX,hY,hZ,ha,hb,hc,hd,he,hf,hg,hh,hi,hj,hk,hl,hm,hn,ho,hp,hq,hr,hs,ht,hu,hv,hw,hx,hy,hz,i,i0,i1,i2,i3,i4,i5,i6,i7,i8,i9,iA,iB,iC,iD,iE,iF,iG,iH,iI,iJ,iK,iL,iM,iN,iO,iP,iQ,iR,iS,iT,iU,iV,iW,iX,ia,ib,ic,id,ie,if,ig,ih,ii,ij,ik,il,im,in,io,ip,iq,ir,is,it,iu,iv,iw,ix,iy,iz,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z
capsid protein protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 1
95 % 41 45 1
90 % 42 46 1
70 % 42 46 3
50 % 42 46 2
40 % 42 46 2
30 % 45 49 5

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.