Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8530
95 % 2 3 8562
90 % 2 3 8495
70 % 2 3 8192
50 % 5 7 3492
40 % 5 7 3513
30 % 5 7 3225
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3730
95 % 6 8 4097
90 % 6 8 4145
70 % 6 8 4075
50 % 6 8 3970
40 % 6 8 3767
30 % 6 9 2947
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3730
95 % 7 8 4097
90 % 7 8 4145
70 % 7 8 4075
50 % 7 8 3970
40 % 7 8 3767
30 % 7 9 2947
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9921
95 % 2 2 9725
90 % 2 2 9596
70 % 2 2 9155
50 % 2 2 8339
40 % 2 2 7614
30 % 2 2 6605
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9920
95 % 2 2 9724
90 % 2 2 9595
70 % 2 2 9154
50 % 2 2 8338
40 % 2 2 7613
30 % 2 2 6604
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9917
95 % 3 3 7425
90 % 5 6 3541
70 % 19 21 1329
50 % 21 24 1144
40 % 21 24 1153
30 % 21 24 1146

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4AGK 1 A CAPSID PROTEIN RESIDUES 110-267 44158 3.4.21.90 | Details
2 4UON 1 A, B CAPSID PROTEASE RESIDUES 110-265 44158 3.4.21.90 | Details
3 4AGJ 1 A CAPSID PROTEIN RESIDUES 110-267 44158 3.4.21.90 | Details
4 1SVP 1 A, B SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID PROTEIN 11034 3.4.21 | Details
5 1WYK 1 A, B, C, D SINDBIS VIRUS CAPSID PROTEIN C-TERMINAL DOMAIN 11034 3.4.21 | Details
6 5H23 1 A, B Capsid Protein 37124
7 5G4B 1 A CAPSID PROTEIN 44158 3.4.21.90 | Details
8 1KXF 1 A SINDBIS VIRUS CAPSID PROTEIN MET 1 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
9 1EP5 1 A, B, C CAPSID PROTEIN C C-TERMINAL DOMAIN 11036 3.4.21 | Details
10 1EP6 1 A, B, C CAPSID PROTEIN C C-TERMINAL DOMAIN 11036 3.4.21 | Details
11 2SNW 1 A, B COAT PROTEIN C 11034 3.4.21 | Details
12 1VCP 1 A, B, C SEMLIKI FOREST VIRUS CAPSID PROTEIN CRYSTAL FORM 1 11033
13 1VCQ 1 A, B SEMLIKI FOREST VIRUS CAPSID PROTEIN CRYSTAL FORM II 11033
14 1KXB 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
15 2SNV 1 A SINDBIS VIRUS COAT PROTEIN 11034
16 1KXD 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
17 1KXA 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
18 1KXC 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
19 1KXE 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
20 5VU2 3 I, J, K, L capsid protein UNP residues 113-261 37124
21 3J2W 6 I, J, K, L Capsid protein UNP residues 113-261 37124
22 3J0C 3 C, F, I, L Capsid protein C-terminal protease domain (UNP residues 114-275) 11036 3.4.21.90 | Details
23 1Z8Y 5 Q, R, S, T Capsid protein C Capsid protein, residues 114-264 11034 3.4.21 | Details
24 1DYL 1 A, B, C, D NUCLEOCAPSID PROTEIN 11033