Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8752
95 % 2 3 8770
90 % 2 3 8700
70 % 2 3 8401
50 % 5 7 3585
40 % 5 7 3612
30 % 5 7 3301
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3854
95 % 6 8 4227
90 % 6 8 4278
70 % 6 8 4196
50 % 6 8 4067
40 % 6 8 3860
30 % 6 9 3019
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3854
95 % 7 8 4227
90 % 7 8 4278
70 % 7 8 4196
50 % 7 8 4067
40 % 7 8 3860
30 % 7 9 3019
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10153
95 % 2 2 9946
90 % 2 2 9810
70 % 2 2 9380
50 % 2 2 8551
40 % 2 2 7808
30 % 2 2 6773
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10152
95 % 2 2 9945
90 % 2 2 9809
70 % 2 2 9379
50 % 2 2 8550
40 % 2 2 7807
30 % 2 2 6772
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10149
95 % 3 3 7604
90 % 5 6 3638
70 % 19 21 1367
50 % 21 24 1173
40 % 21 24 1176
30 % 21 24 1169

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4AGK 1 A CAPSID PROTEIN RESIDUES 110-267 44158 3.4.21.90 | Details
2 4UON 1 A, B CAPSID PROTEASE RESIDUES 110-265 44158 3.4.21.90 | Details
3 4AGJ 1 A CAPSID PROTEIN RESIDUES 110-267 44158 3.4.21.90 | Details
4 1SVP 1 A, B SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID PROTEIN 11034 3.4.21 | Details
5 1WYK 1 A, B, C, D SINDBIS VIRUS CAPSID PROTEIN C-TERMINAL DOMAIN 11034 3.4.21 | Details
6 5H23 1 A, B Capsid Protein 37124
7 5G4B 1 A CAPSID PROTEIN 44158 3.4.21.90 | Details
8 1KXF 1 A SINDBIS VIRUS CAPSID PROTEIN MET 1 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
9 1EP5 1 A, B, C CAPSID PROTEIN C C-TERMINAL DOMAIN 11036 3.4.21 | Details
10 1EP6 1 A, B, C CAPSID PROTEIN C C-TERMINAL DOMAIN 11036 3.4.21 | Details
11 2SNW 1 A, B COAT PROTEIN C 11034 3.4.21 | Details
12 1VCP 1 A, B, C SEMLIKI FOREST VIRUS CAPSID PROTEIN CRYSTAL FORM 1 11033
13 1VCQ 1 A, B SEMLIKI FOREST VIRUS CAPSID PROTEIN CRYSTAL FORM II 11033
14 1KXB 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
15 2SNV 1 A SINDBIS VIRUS COAT PROTEIN 11034
16 1KXD 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
17 1KXA 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
18 1KXC 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
19 1KXE 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
20 5VU2 3 I, J, K, L capsid protein UNP residues 113-261 37124
21 3J2W 6 I, J, K, L Capsid protein UNP residues 113-261 37124
22 3J0C 3 C, F, I, L Capsid protein C-terminal protease domain (UNP residues 114-275) 11036 3.4.21.90 | Details
23 1Z8Y 5 Q, R, S, T Capsid protein C Capsid protein, residues 114-264 11034 3.4.21 | Details
24 1DYL 1 A, B, C, D NUCLEOCAPSID PROTEIN 11033