Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 9000
95 % 2 3 9015
90 % 2 3 8927
70 % 2 3 8607
50 % 5 7 3647
40 % 5 7 3670
30 % 5 7 3354
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3986
95 % 6 8 4350
90 % 6 8 4393
70 % 6 8 4293
50 % 6 8 4145
40 % 6 8 3927
30 % 6 9 3071
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3986
95 % 7 8 4350
90 % 7 8 4393
70 % 7 8 4293
50 % 7 8 4145
40 % 7 8 3927
30 % 7 9 3071
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9844
95 % 2 2 9717
90 % 2 2 9595
70 % 2 2 9190
50 % 2 2 8361
40 % 2 2 7647
30 % 2 2 6648
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10434
95 % 2 2 10224
90 % 2 2 10077
70 % 2 2 9607
50 % 2 2 8717
40 % 2 2 7954
30 % 2 2 6895
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10431
95 % 3 3 7813
90 % 5 6 3719
70 % 19 21 1417
50 % 21 24 1204
40 % 21 24 1202
30 % 21 24 1198

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5VU2 3 I, J, K, L capsid protein UNP residues 113-261 37124
2 3J2W 6 I, J, K, L Capsid protein UNP residues 113-261 37124