Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8752
95 % 2 3 8770
90 % 2 3 8700
70 % 2 3 8401
50 % 5 7 3585
40 % 5 7 3612
30 % 5 7 3301
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3854
95 % 6 8 4227
90 % 6 8 4278
70 % 6 8 4196
50 % 6 8 4067
40 % 6 8 3860
30 % 6 9 3019
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3854
95 % 7 8 4227
90 % 7 8 4278
70 % 7 8 4196
50 % 7 8 4067
40 % 7 8 3860
30 % 7 9 3019
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10153
95 % 2 2 9946
90 % 2 2 9810
70 % 2 2 9380
50 % 2 2 8551
40 % 2 2 7808
30 % 2 2 6773
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10152
95 % 2 2 9945
90 % 2 2 9809
70 % 2 2 9379
50 % 2 2 8550
40 % 2 2 7807
30 % 2 2 6772
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10149
95 % 3 3 7604
90 % 5 6 3638
70 % 19 21 1367
50 % 21 24 1173
40 % 21 24 1176
30 % 21 24 1169

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5VU2 5 Q, R, S, T E2 envelope glycoprotein transmembrane helix (UNP residues 668-748) 37124
2 3J2W 5 Q, R, S, T Glycoprotein E2 UNP residues 1203-1248 37124