Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8530
95 % 2 3 8562
90 % 2 3 8495
70 % 2 3 8192
50 % 5 7 3492
40 % 5 7 3513
30 % 5 7 3225
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3730
95 % 6 8 4097
90 % 6 8 4145
70 % 6 8 4075
50 % 6 8 3970
40 % 6 8 3767
30 % 6 9 2947
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3730
95 % 7 8 4097
90 % 7 8 4145
70 % 7 8 4075
50 % 7 8 3970
40 % 7 8 3767
30 % 7 9 2947
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9921
95 % 2 2 9725
90 % 2 2 9596
70 % 2 2 9155
50 % 2 2 8339
40 % 2 2 7614
30 % 2 2 6605
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9920
95 % 2 2 9724
90 % 2 2 9595
70 % 2 2 9154
50 % 2 2 8338
40 % 2 2 7613
30 % 2 2 6604
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9917
95 % 3 3 7425
90 % 5 6 3541
70 % 19 21 1329
50 % 21 24 1144
40 % 21 24 1153
30 % 21 24 1146

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5VU2 5 Q, R, S, T E2 envelope glycoprotein transmembrane helix (UNP residues 668-748) 37124
2 3J2W 5 Q, R, S, T Glycoprotein E2 UNP residues 1203-1248 37124