Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 9185
95 % 2 3 9200
90 % 2 3 9098
70 % 2 3 8765
50 % 5 7 3711
40 % 5 7 3728
30 % 5 7 3412
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 4068
95 % 6 8 4438
90 % 6 8 4474
70 % 6 8 4371
50 % 6 8 4208
40 % 6 8 3990
30 % 6 9 3127
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 4068
95 % 7 8 4438
90 % 7 8 4474
70 % 7 8 4371
50 % 7 8 4208
40 % 7 8 3990
30 % 7 9 3127
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10052
95 % 2 2 9920
90 % 2 2 9783
70 % 2 2 9361
50 % 2 2 8496
40 % 2 2 7773
30 % 2 2 6760
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10652
95 % 2 2 10431
90 % 2 2 10269
70 % 2 2 9784
50 % 2 2 8863
40 % 2 2 8087
30 % 2 2 7013
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10649
95 % 3 3 7991
90 % 5 6 3811
70 % 19 21 1450
50 % 21 24 1229
40 % 21 24 1230
30 % 21 24 1223

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5VU2 4 E, F, G, H E1 envelope glycoprotein transmembrane helix (UNP residues 1203-1248) 37124
2 3J2W 4 E, F, G, H Glycoprotein E1 UNP residues 668-748 37124