Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8768
95 % 2 3 8790
90 % 2 3 8724
70 % 2 3 8435
50 % 5 7 3586
40 % 5 7 3617
30 % 5 7 3303
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3860
95 % 6 8 4236
90 % 6 8 4284
70 % 6 8 4202
50 % 6 8 4070
40 % 6 8 3863
30 % 6 9 3020
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3860
95 % 7 8 4236
90 % 7 8 4284
70 % 7 8 4202
50 % 7 8 4070
40 % 7 8 3863
30 % 7 9 3020
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10178
95 % 2 2 9977
90 % 2 2 9845
70 % 2 2 9424
50 % 2 2 8574
40 % 2 2 7822
30 % 2 2 6781
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10177
95 % 2 2 9976
90 % 2 2 9844
70 % 2 2 9423
50 % 2 2 8573
40 % 2 2 7821
30 % 2 2 6780
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10174
95 % 3 3 7614
90 % 5 6 3639
70 % 19 21 1368
50 % 21 24 1173
40 % 21 24 1176
30 % 21 24 1174

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5VU2 4 E, F, G, H E1 envelope glycoprotein transmembrane helix (UNP residues 1203-1248) 37124
2 3J2W 4 E, F, G, H Glycoprotein E1 UNP residues 668-748 37124