Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 9209
95 % 2 3 9220
90 % 2 3 9118
70 % 2 3 8784
50 % 5 7 3715
40 % 5 7 3736
30 % 5 7 3416
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 4093
95 % 6 8 4466
90 % 6 8 4504
70 % 6 8 4390
50 % 6 8 4215
40 % 6 8 4001
30 % 6 9 3127
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 4093
95 % 7 8 4466
90 % 7 8 4504
70 % 7 8 4390
50 % 7 8 4215
40 % 7 8 4001
30 % 7 9 3127
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10074
95 % 2 2 9938
90 % 2 2 9799
70 % 2 2 9380
50 % 2 2 8512
40 % 2 2 7785
30 % 2 2 6770
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10674
95 % 2 2 10449
90 % 2 2 10285
70 % 2 2 9802
50 % 2 2 8878
40 % 2 2 8098
30 % 2 2 7021
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10671
95 % 3 3 8012
90 % 5 6 3823
70 % 19 21 1454
50 % 21 24 1230
40 % 21 24 1231
30 % 21 24 1223

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3N44 2 B E2 envelope glycoprotein polyprotein fragment residues 329-666 37124
2 3N43 2 B E2 envelope glycoprotein polyprotein fragment residues 332-667 37124
3 3N42 2 B E2 envelope glycoprotein polyprotein fragment residues 330-667 37124
4 3N41 2 B E2 envelope glycoprotein polyprotein fragment residues 330-667 37124
5 5ANY 2 B, D, F, H E2 37124
6 3J2W 2 M, N, O Glycoprotein E2 UNP residues 332-667 37124
7 3J2W 3 P Glycoprotein E2 UNP residues 332-667 37124
8 2XFB 2 B, E, G, I E2 ENVELOPE GLYCOPROTEIN ECTODOMAIN, RESIDUES 326-748 37124