Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8517
95 % 2 3 8553
90 % 2 3 8486
70 % 2 3 8183
50 % 5 7 3492
40 % 5 7 3511
30 % 5 7 3225
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3733
95 % 6 8 4097
90 % 6 8 4145
70 % 6 8 4430
50 % 6 8 4263
40 % 6 8 4030
30 % 6 9 2948
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3733
95 % 7 8 4097
90 % 7 8 4145
70 % 7 8 4430
50 % 7 8 4263
40 % 7 8 4030
30 % 7 9 2948
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9905
95 % 2 2 9712
90 % 2 2 9582
70 % 2 2 9145
50 % 2 2 8326
40 % 2 2 7601
30 % 2 2 6598
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9904
95 % 2 2 9711
90 % 2 2 9581
70 % 2 2 9144
50 % 2 2 8325
40 % 2 2 7600
30 % 2 2 6597
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9901
95 % 3 3 7416
90 % 5 6 3541
70 % 19 21 1329
50 % 21 24 1142
40 % 21 24 1150
30 % 21 24 1142

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3N44 2 B E2 envelope glycoprotein polyprotein fragment residues 329-666 37124
2 3N43 2 B E2 envelope glycoprotein polyprotein fragment residues 332-667 37124
3 3N42 2 B E2 envelope glycoprotein polyprotein fragment residues 330-667 37124
4 3N41 2 B E2 envelope glycoprotein polyprotein fragment residues 330-667 37124
5 5ANY 2 B, D, F, H E2 37124
6 3J2W 2 M, N, O Glycoprotein E2 UNP residues 332-667 37124
7 3J2W 3 P Glycoprotein E2 UNP residues 332-667 37124
8 2XFB 2 B, E, G, I E2 ENVELOPE GLYCOPROTEIN ECTODOMAIN, RESIDUES 326-748 37124