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Electron cryo-microscopy of Chikungunya virus
Sequence Clustering and Redundancy Reduction Results
3J2W
Sequence Clusters for the Sequence Entities in PDB 3J2W
Entity #1: Chains: A,B,C,D - Glycoprotein E1 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 4908
95% 2 3 5493
90% 2 3 5497
70% 2 3 5410
50% 5 7 2488
40% 5 7 2475
30% 5 7 2311
Entity #2: Chains: M,N,O,P - Glycoprotein E2 protein, length: 336 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 6 3279
95% 5 6 3906
90% 5 6 3946
70% 5 6 3947
50% 5 6 3833
40% 5 6 3645
30% 5 7 2593
Entity #3: Chains: E,F,G,H - Glycoprotein E1 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 18088
95% 1 1 15659
90% 1 1 15276
70% 1 1 14185
50% 1 1 12459
40% 1 1 11194
30% 1 1 9689
Entity #4: Chains: Q,R,S,T - Glycoprotein E2 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 17830
95% 1 1 15430
90% 1 1 15059
70% 1 1 13981
50% 1 1 12261
40% 1 1 11012
30% 1 1 9523
Entity #5: Chains: I,J,K,L - Capsid protein protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 16582
95% 1 1 14546
90% 3 4 3671
70% 3 4 3669
50% 17 20 881
40% 17 20 909
30% 17 20 897
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.