Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 6165
95 % 2 3 6732
90 % 2 3 6708
70 % 2 3 6541
50 % 5 7 3032
40 % 5 7 2951
30 % 5 7 2763
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 2851
95 % 6 8 3566
90 % 6 8 3609
70 % 6 8 3574
50 % 6 8 3486
40 % 6 8 3345
30 % 6 9 2504
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 2851
95 % 7 8 3566
90 % 7 8 3609
70 % 7 8 3574
50 % 7 8 3486
40 % 7 8 3345
30 % 7 9 2504
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22096
95 % 1 1 18893
90 % 1 1 18377
70 % 1 1 16979
50 % 1 1 14829
40 % 1 1 13265
30 % 1 1 11383
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21783
95 % 1 1 18615
90 % 1 1 18115
70 % 1 1 16739
50 % 1 1 14606
40 % 1 1 13062
30 % 1 1 11201
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20312
95 % 1 1 17560
90 % 3 4 4605
70 % 3 4 4554
50 % 18 21 1115
40 % 18 21 1132
30 % 18 21 1118

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.