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Electron cryo-microscopy of Chikungunya virus
Sequence Clustering and Redundancy Reduction Results
3J2W
Sequence Clusters for the Sequence Entities in PDB 3J2W
Entity #1: Chains: A,B,C,D - Glycoprotein E1 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 5434
95% 2 3 6030
90% 2 3 6009
70% 2 3 5883
50% 5 7 2720
40% 5 7 2667
30% 5 7 2495
Entity #2: Chains: M,N,O,P - Glycoprotein E2 protein, length: 336 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 6 3685
95% 5 6 4360
90% 5 6 4392
70% 5 6 4359
50% 5 6 4158
40% 5 6 3945
30% 5 7 2807
Entity #3: Chains: E,F,G,H - Glycoprotein E1 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 19692
95% 1 1 16947
90% 1 1 16513
70% 1 1 15317
50% 1 1 13437
40% 1 1 12072
30% 1 1 10398
Entity #4: Chains: Q,R,S,T - Glycoprotein E2 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 19414
95% 1 1 16705
90% 1 1 16282
70% 1 1 15103
50% 1 1 13230
40% 1 1 11886
30% 1 1 10230
Entity #5: Chains: I,J,K,L - Capsid protein protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 18081
95% 1 1 15750
90% 3 4 4101
70% 3 4 4070
50% 17 20 1022
40% 17 20 1046
30% 17 20 1026
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.