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An Information Portal to 107049 Biological Macromolecular Structures

Electron cryo-microscopy of Chikungunya virus
Sequence Clustering and Redundancy Reduction Results
3J2W
Sequence Clusters for the Sequence Entities in PDB 3J2W
Entity #1: Chains: A,B,C,D - Glycoprotein E1 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 5215
95% 2 3 5816
90% 2 3 5812
70% 2 3 5687
50% 5 7 2634
40% 5 7 2592
30% 5 7 2408
Entity #2: Chains: M,N,O,P - Glycoprotein E2 protein, length: 336 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 6 3508
95% 5 6 4147
90% 5 6 4179
70% 5 6 4174
50% 5 6 4019
40% 5 6 3818
30% 5 7 2711
Entity #3: Chains: E,F,G,H - Glycoprotein E1 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 18994
95% 1 1 16370
90% 1 1 15952
70% 1 1 14779
50% 1 1 12958
40% 1 1 11644
30% 1 1 10043
Entity #4: Chains: Q,R,S,T - Glycoprotein E2 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 18720
95% 1 1 16132
90% 1 1 15726
70% 1 1 14566
50% 1 1 12752
40% 1 1 11457
30% 1 1 9873
Entity #5: Chains: I,J,K,L - Capsid protein protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 17432
95% 1 1 15215
90% 3 4 3900
70% 3 4 3895
50% 17 20 982
40% 17 20 1013
30% 17 20 991
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.