Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 6895
95 % 2 3 7464
90 % 2 3 7420
70 % 2 3 7227
50 % 5 7 3319
40 % 5 7 3215
30 % 5 7 3016
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3169
95 % 6 8 3931
90 % 6 8 3970
70 % 6 8 3915
50 % 6 8 3809
40 % 6 8 3647
30 % 6 9 2743
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3169
95 % 7 8 3931
90 % 7 8 3970
70 % 7 8 3915
50 % 7 8 3809
40 % 7 8 3647
30 % 7 9 2743
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24276
95 % 1 1 20734
90 % 1 1 20156
70 % 1 1 18511
50 % 1 1 16092
40 % 1 1 14360
30 % 1 1 12290
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23942
95 % 1 1 20436
90 % 1 1 19871
70 % 1 1 18249
50 % 1 1 15850
40 % 1 1 14142
30 % 1 1 12095
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22344
95 % 1 1 19283
90 % 3 4 5089
70 % 3 4 5028
50 % 19 22 1203
40 % 19 22 1215
30 % 19 22 1191

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.