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Electron cryo-microscopy of Chikungunya virus
Sequence Clustering and Redundancy Reduction Results
3J2W
Sequence Clusters for the Sequence Entities in PDB 3J2W
Entity #1: Chains: A,B,C,D - Glycoprotein E1 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 5499
95% 2 3 6101
90% 2 3 6080
70% 2 3 5946
50% 5 7 2744
40% 5 7 2691
30% 5 7 2517
Entity #2: Chains: M,N,O,P - Glycoprotein E2 protein, length: 336 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 6 3746
95% 5 6 4416
90% 5 6 4450
70% 5 6 4418
50% 5 6 4217
40% 5 6 3997
30% 5 7 2838
Entity #3: Chains: E,F,G,H - Glycoprotein E1 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 19922
95% 1 1 17158
90% 1 1 16700
70% 1 1 15471
50% 1 1 13563
40% 1 1 12180
30% 1 1 10488
Entity #4: Chains: Q,R,S,T - Glycoprotein E2 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 19643
95% 1 1 16915
90% 1 1 16469
70% 1 1 15256
50% 1 1 13355
40% 1 1 11993
30% 1 1 10319
Entity #5: Chains: I,J,K,L - Capsid protein protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 18297
95% 1 1 15950
90% 3 4 4164
70% 3 4 4130
50% 17 20 1035
40% 17 20 1058
30% 17 20 1031
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.