Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 5925
95 % 2 3 6502
90 % 2 3 6480
70 % 2 3 6319
50 % 5 7 2919
40 % 5 7 2853
30 % 5 7 2668
Entity #2 | Chains: M,N,O,P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 2736
95 % 6 7 3448
90 % 6 7 3486
70 % 6 7 3464
50 % 6 7 3364
40 % 6 7 3240
30 % 6 8 2428
Entity #3 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21352
95 % 1 1 18315
90 % 1 1 17827
70 % 1 1 16468
50 % 1 1 14408
40 % 1 1 12915
30 % 1 1 11100
Entity #4 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21048
95 % 1 1 18045
90 % 1 1 17570
70 % 1 1 16231
50 % 1 1 14184
40 % 1 1 12714
30 % 1 1 10917
Entity #5 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19606
95 % 1 1 17011
90 % 3 4 4445
70 % 3 4 4403
50 % 17 20 1100
40 % 17 20 1128
30 % 17 20 1102

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.