Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 6513
95 % 2 3 7045
90 % 2 3 7012
70 % 2 3 6824
50 % 5 7 3181
40 % 5 7 3084
30 % 5 7 2900
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3013
95 % 6 8 3760
90 % 6 8 3795
70 % 6 8 3744
50 % 6 8 3642
40 % 6 8 3493
30 % 6 9 2624
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3013
95 % 7 8 3760
90 % 7 8 3795
70 % 7 8 3744
50 % 7 8 3642
40 % 7 8 3493
30 % 7 9 2624
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23091
95 % 1 1 19700
90 % 1 1 19171
70 % 1 1 17692
50 % 1 1 15438
40 % 1 1 13786
30 % 1 1 11821
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22769
95 % 1 1 19413
90 % 1 1 18896
70 % 1 1 17438
50 % 1 1 15200
40 % 1 1 13571
30 % 1 1 11627
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21244
95 % 1 1 18325
90 % 3 4 4834
70 % 3 4 4767
50 % 19 22 1151
40 % 19 22 1165
30 % 19 22 1143

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.