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An Information Portal to 109093 Biological Macromolecular Structures

Electron cryo-microscopy of Chikungunya virus
Sequence Clustering and Redundancy Reduction Results
3J2W
Sequence Clusters for the Sequence Entities in PDB 3J2W
Entity #1: Chains: A,B,C,D - Glycoprotein E1 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 5326
95% 2 3 5925
90% 2 3 5913
70% 2 3 5788
50% 5 7 2681
40% 5 7 2636
30% 5 7 2456
Entity #2: Chains: M,N,O,P - Glycoprotein E2 protein, length: 336 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 6 3605
95% 5 6 4264
90% 5 6 4295
70% 5 6 4276
50% 5 6 4095
40% 5 6 3886
30% 5 7 2764
Entity #3: Chains: E,F,G,H - Glycoprotein E1 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 19327
95% 1 1 16638
90% 1 1 16221
70% 1 1 15071
50% 1 1 13218
40% 1 1 11873
30% 1 1 10232
Entity #4: Chains: Q,R,S,T - Glycoprotein E2 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 19051
95% 1 1 16398
90% 1 1 15993
70% 1 1 14856
50% 1 1 13010
40% 1 1 11685
30% 1 1 10061
Entity #5: Chains: I,J,K,L - Capsid protein protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 17738
95% 1 1 15454
90% 3 4 4000
70% 3 4 3987
50% 17 20 1001
40% 17 20 1029
30% 17 20 1010
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.