Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8012
95 % 2 3 8606
90 % 2 3 8568
70 % 2 3 9056
50 % 5 7 3918
40 % 5 7 4035
30 % 5 7 3945
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 4276
95 % 6 8 4649
90 % 6 8 4697
70 % 6 8 4707
50 % 6 8 4522
40 % 6 8 4420
30 % 6 9 3550
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57449
95 % 7 8 4649
90 % 7 8 4697
70 % 7 8 4707
50 % 7 8 4522
40 % 7 8 4420
30 % 7 9 3550
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9846
95 % 2 2 10053
90 % 2 2 9988
70 % 2 2 9659
50 % 2 2 8965
40 % 2 2 8547
30 % 2 2 7618
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 8951
95 % 2 2 9460
90 % 2 2 9400
70 % 2 2 9164
50 % 2 2 8534
40 % 2 2 8168
30 % 2 2 7617
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10345
95 % 3 3 8113
90 % 5 6 3852
70 % 5 6 3834
50 % 21 24 1240
40 % 21 24 1280
30 % 21 24 1323

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures