Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 7974
95 % 2 3 8578
90 % 2 3 8548
70 % 2 3 9043
50 % 5 7 3909
40 % 5 7 4016
30 % 5 7 3919
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 4296
95 % 6 8 4705
90 % 6 8 4747
70 % 6 8 4706
50 % 6 8 4558
40 % 6 8 4468
30 % 6 9 3563
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57353
95 % 7 8 4705
90 % 7 8 4747
70 % 7 8 4706
50 % 7 8 4558
40 % 7 8 4468
30 % 7 9 3563
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9710
95 % 2 2 10559
90 % 2 2 10457
70 % 2 2 10072
50 % 2 2 9306
40 % 2 2 8839
30 % 2 2 8191
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 8916
95 % 2 2 9456
90 % 2 2 9403
70 % 2 2 9162
50 % 2 2 8525
40 % 2 2 8157
30 % 2 2 7595
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 8917
95 % 3 3 7571
90 % 5 6 3845
70 % 5 6 3830
50 % 21 24 1240
40 % 21 24 1283
30 % 21 24 1314

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures