Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8981
95 % 2 3 9000
90 % 2 3 8914
70 % 2 3 8592
50 % 5 7 3644
40 % 5 7 3666
30 % 5 7 3344
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3976
95 % 6 8 4341
90 % 6 8 4383
70 % 6 8 4286
50 % 6 8 4139
40 % 6 8 3919
30 % 6 9 3060
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3976
95 % 7 8 4341
90 % 7 8 4383
70 % 7 8 4286
50 % 7 8 4139
40 % 7 8 3919
30 % 7 9 3060
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9824
95 % 2 2 9698
90 % 2 2 9579
70 % 2 2 9176
50 % 2 2 8348
40 % 2 2 7632
30 % 2 2 6626
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10410
95 % 2 2 10203
90 % 2 2 10058
70 % 2 2 9589
50 % 2 2 8701
40 % 2 2 7935
30 % 2 2 6871
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10407
95 % 3 3 7801
90 % 5 6 3714
70 % 19 21 1416
50 % 21 24 1203
40 % 21 24 1201
30 % 21 24 1196

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures