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Electron cryo-microscopy of Chikungunya virus
Sequence Clustering and Redundancy Reduction Results
3J2W
Sequence Clusters for the Sequence Entities in PDB 3J2W
Entity #1: Chains: A,B,C,D - Glycoprotein E1 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 5380
95% 2 3 5979
90% 2 3 5961
70% 2 3 5838
50% 5 7 2707
40% 5 7 2657
30% 5 7 2480
Entity #2: Chains: M,N,O,P - Glycoprotein E2 protein, length: 336 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 6 3656
95% 5 6 4330
90% 5 6 4362
70% 5 6 4329
50% 5 6 4135
40% 5 6 3926
30% 5 7 2788
Entity #3: Chains: E,F,G,H - Glycoprotein E1 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 19506
95% 1 1 16775
90% 1 1 16357
70% 1 1 15184
50% 1 1 13316
40% 1 1 11960
30% 1 1 10307
Entity #4: Chains: Q,R,S,T - Glycoprotein E2 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 19228
95% 1 1 16535
90% 1 1 16128
70% 1 1 14970
50% 1 1 13109
40% 1 1 11773
30% 1 1 10137
Entity #5: Chains: I,J,K,L - Capsid protein protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 17905
95% 1 1 15582
90% 3 4 4063
70% 3 4 4038
50% 17 20 1017
40% 17 20 1040
30% 17 20 1019
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.