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Electron cryo-microscopy of Chikungunya virus
Sequence Clustering and Redundancy Reduction Results
3J2W
Sequence Clusters for the Sequence Entities in PDB 3J2W
Entity #1: Chains: A,B,C,D - Glycoprotein E1 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 5257
95% 2 3 5853
90% 2 3 5846
70% 2 3 5721
50% 5 7 2652
40% 5 7 2609
30% 5 7 2426
Entity #2: Chains: M,N,O,P - Glycoprotein E2 protein, length: 336 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 6 3534
95% 5 6 4177
90% 5 6 4207
70% 5 6 4205
50% 5 6 4038
40% 5 6 3835
30% 5 7 2732
Entity #3: Chains: E,F,G,H - Glycoprotein E1 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 19085
95% 1 1 16434
90% 1 1 16015
70% 1 1 14835
50% 1 1 13013
40% 1 1 11690
30% 1 1 10082
Entity #4: Chains: Q,R,S,T - Glycoprotein E2 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 18810
95% 1 1 16195
90% 1 1 15788
70% 1 1 14621
50% 1 1 12806
40% 1 1 11502
30% 1 1 9911
Entity #5: Chains: I,J,K,L - Capsid protein protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 17517
95% 1 1 15274
90% 3 4 3926
70% 3 4 3921
50% 17 20 987
40% 17 20 1016
30% 17 20 998
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.