Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8679
95 % 2 3 8698
90 % 2 3 8628
70 % 2 3 8311
50 % 5 7 3543
40 % 5 7 3566
30 % 5 7 3278
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3803
95 % 6 8 4171
90 % 6 8 4221
70 % 6 8 4144
50 % 6 8 4022
40 % 6 8 3821
30 % 6 9 2998
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3803
95 % 7 8 4171
90 % 7 8 4221
70 % 7 8 4144
50 % 7 8 4022
40 % 7 8 3821
30 % 7 9 2998
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10068
95 % 2 2 9868
90 % 2 2 9733
70 % 2 2 9292
50 % 2 2 8459
40 % 2 2 7727
30 % 2 2 6699
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10067
95 % 2 2 9867
90 % 2 2 9732
70 % 2 2 9291
50 % 2 2 8458
40 % 2 2 7726
30 % 2 2 6698
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10064
95 % 3 3 7540
90 % 5 6 3596
70 % 19 21 1349
50 % 21 24 1160
40 % 21 24 1165
30 % 21 24 1158

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures