Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8841
95 % 2 3 8866
90 % 2 3 8790
70 % 2 3 8493
50 % 5 7 3599
40 % 5 7 3630
30 % 5 7 3316
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3890
95 % 6 8 4259
90 % 6 8 4309
70 % 6 8 4226
50 % 6 8 4091
40 % 6 8 3880
30 % 6 9 3031
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3890
95 % 7 8 4259
90 % 7 8 4309
70 % 7 8 4226
50 % 7 8 4091
40 % 7 8 3880
30 % 7 9 3031
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10258
95 % 2 2 10059
90 % 2 2 9922
70 % 2 2 9481
50 % 2 2 8614
40 % 2 2 7859
30 % 2 2 6809
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10257
95 % 2 2 10058
90 % 2 2 9921
70 % 2 2 9480
50 % 2 2 8613
40 % 2 2 7858
30 % 2 2 6808
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10254
95 % 3 3 7689
90 % 5 6 3664
70 % 19 21 1381
50 % 21 24 1177
40 % 21 24 1179
30 % 21 24 1176

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures