Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 7164
95 % 2 3 7741
90 % 2 3 7688
70 % 2 3 7477
50 % 5 7 3451
40 % 5 7 3334
30 % 5 7 3130
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3320
95 % 6 8 4087
90 % 6 8 4125
70 % 6 8 4073
50 % 6 8 3933
40 % 6 8 3767
30 % 6 9 2841
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3320
95 % 7 8 4087
90 % 7 8 4125
70 % 7 8 4073
50 % 7 8 3933
40 % 7 8 3767
30 % 7 9 2841
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10184
95 % 2 2 10216
90 % 2 2 10090
70 % 2 2 9582
50 % 2 2 8673
40 % 2 2 7953
30 % 2 2 7018
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10100
95 % 2 2 10135
90 % 2 2 10011
70 % 2 2 9510
50 % 2 2 8605
40 % 2 2 7887
30 % 2 2 6951
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9699
95 % 2 2 9821
90 % 4 5 3929
70 % 4 5 3875
50 % 20 23 1142
40 % 20 23 1152
30 % 20 23 1138

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures