Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8463
95 % 2 3 8506
90 % 2 3 8435
70 % 2 3 8124
50 % 5 7 3477
40 % 5 7 3492
30 % 5 7 3214
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3715
95 % 6 8 4081
90 % 6 8 4128
70 % 6 8 4411
50 % 6 8 4244
40 % 6 8 4011
30 % 6 9 2938
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3715
95 % 7 8 4081
90 % 7 8 4128
70 % 7 8 4411
50 % 7 8 4244
40 % 7 8 4011
30 % 7 9 2938
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9851
95 % 2 2 9652
90 % 2 2 9529
70 % 2 2 9090
50 % 2 2 8289
40 % 2 2 7571
30 % 2 2 6570
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9850
95 % 2 2 9651
90 % 2 2 9528
70 % 2 2 9089
50 % 2 2 8288
40 % 2 2 7570
30 % 2 2 6569
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9848
95 % 3 3 7373
90 % 5 6 3524
70 % 19 21 1318
50 % 21 24 1131
40 % 21 24 1136
30 % 21 24 1134

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures