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Electron cryo-microscopy of Chikungunya virus
Sequence Clustering and Redundancy Reduction Results
3J2W
Sequence Clusters for the Sequence Entities in PDB 3J2W
Entity #1: Chains: A,B,C,D - Glycoprotein E1 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 5013
95% 2 3 5603
90% 2 3 5606
70% 2 3 5512
50% 5 7 2542
40% 5 7 2518
30% 5 7 2347
Entity #2: Chains: M,N,O,P - Glycoprotein E2 protein, length: 336 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 6 3375
95% 5 6 4007
90% 5 6 4043
70% 5 6 4034
50% 5 6 3906
40% 5 6 3709
30% 5 7 2639
Entity #3: Chains: E,F,G,H - Glycoprotein E1 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 18389
95% 1 1 15911
90% 1 1 15514
70% 1 1 14391
50% 1 1 12633
40% 1 1 11354
30% 1 1 9807
Entity #4: Chains: Q,R,S,T - Glycoprotein E2 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 18126
95% 1 1 15679
90% 1 1 15294
70% 1 1 14185
50% 1 1 12433
40% 1 1 11171
30% 1 1 9641
Entity #5: Chains: I,J,K,L - Capsid protein protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 16860
95% 1 1 14786
90% 3 4 3768
70% 3 4 3757
50% 17 20 954
40% 17 20 984
30% 17 20 965
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.