Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 6701
95 % 2 3 7242
90 % 2 3 7203
70 % 2 3 7011
50 % 5 7 3244
40 % 5 7 3149
30 % 5 7 2948
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3080
95 % 6 8 3838
90 % 6 8 3874
70 % 6 8 3822
50 % 6 8 3714
40 % 6 8 3567
30 % 6 9 2678
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3080
95 % 7 8 3838
90 % 7 8 3874
70 % 7 8 3822
50 % 7 8 3714
40 % 7 8 3567
30 % 7 9 2678
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23650
95 % 1 1 20184
90 % 1 1 19633
70 % 1 1 18105
50 % 1 1 15763
40 % 1 1 14066
30 % 1 1 12046
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23325
95 % 1 1 19892
90 % 1 1 19351
70 % 1 1 17846
50 % 1 1 15524
40 % 1 1 13848
30 % 1 1 11849
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21765
95 % 1 1 18774
90 % 3 4 4948
70 % 3 4 4874
50 % 19 22 1174
40 % 19 22 1188
30 % 19 22 1170

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.