Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 5937
95 % 2 3 6510
90 % 2 3 6487
70 % 2 3 6323
50 % 5 7 2925
40 % 5 7 2859
30 % 5 7 2673
Entity #2 | Chains: M,N,O,P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 2744
95 % 6 7 3453
90 % 6 7 3492
70 % 6 7 3470
50 % 6 7 3368
40 % 6 7 3244
30 % 6 8 2433
Entity #3 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21391
95 % 1 1 18342
90 % 1 1 17852
70 % 1 1 16491
50 % 1 1 14425
40 % 1 1 12934
30 % 1 1 11109
Entity #4 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21085
95 % 1 1 18070
90 % 1 1 17593
70 % 1 1 16252
50 % 1 1 14200
40 % 1 1 12731
30 % 1 1 10925
Entity #5 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19641
95 % 1 1 17033
90 % 3 4 4450
70 % 3 4 4407
50 % 17 20 1103
40 % 17 20 1130
30 % 17 20 1106

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.