Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 6396
95 % 2 3 6938
90 % 2 3 6913
70 % 2 3 6732
50 % 5 7 3137
40 % 5 7 3042
30 % 5 7 2851
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 2975
95 % 6 8 3718
90 % 6 8 3754
70 % 6 8 3701
50 % 6 8 3603
40 % 6 8 3458
30 % 6 9 2588
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 2975
95 % 7 8 3718
90 % 7 8 3754
70 % 7 8 3701
50 % 7 8 3603
40 % 7 8 3458
30 % 7 9 2588
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22751
95 % 1 1 19430
90 % 1 1 18908
70 % 1 1 17452
50 % 1 1 15247
40 % 1 1 13620
30 % 1 1 11676
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22428
95 % 1 1 19143
90 % 1 1 18634
70 % 1 1 17199
50 % 1 1 15012
40 % 1 1 13405
30 % 1 1 11482
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20920
95 % 1 1 18061
90 % 3 4 4754
70 % 3 4 4691
50 % 19 22 1128
40 % 19 22 1147
30 % 19 22 1128

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.