Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 6089
95 % 2 3 6669
90 % 2 3 6643
70 % 2 3 6480
50 % 5 7 2998
40 % 5 7 2915
30 % 5 7 2726
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 2825
95 % 6 8 3527
90 % 6 8 3566
70 % 6 8 3535
50 % 6 8 3449
40 % 6 8 3306
30 % 6 9 2476
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 2825
95 % 7 8 3527
90 % 7 8 3566
70 % 7 8 3535
50 % 7 8 3449
40 % 7 8 3306
30 % 7 9 2476
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21877
95 % 1 1 18724
90 % 1 1 18215
70 % 1 1 16834
50 % 1 1 14709
40 % 1 1 13167
30 % 1 1 11299
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21562
95 % 1 1 18444
90 % 1 1 17951
70 % 1 1 16593
50 % 1 1 14484
40 % 1 1 12963
30 % 1 1 11114
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20094
95 % 1 1 17393
90 % 3 4 4549
70 % 3 4 4504
50 % 18 21 1104
40 % 18 21 1124
30 % 18 21 1110

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.