Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 6038
95 % 2 3 6615
90 % 2 3 6592
70 % 2 3 6429
50 % 5 7 2980
40 % 5 7 2900
30 % 5 7 2710
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 2796
95 % 6 8 3509
90 % 6 8 3548
70 % 6 8 3519
50 % 6 8 3427
40 % 6 8 3288
30 % 6 9 2461
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 2796
95 % 7 8 3509
90 % 7 8 3548
70 % 7 8 3519
50 % 7 8 3427
40 % 7 8 3288
30 % 7 9 2461
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21734
95 % 1 1 18604
90 % 1 1 18101
70 % 1 1 16733
50 % 1 1 14624
40 % 1 1 13098
30 % 1 1 11256
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21422
95 % 1 1 18327
90 % 1 1 17838
70 % 1 1 16492
50 % 1 1 14398
40 % 1 1 12894
30 % 1 1 11071
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19956
95 % 1 1 17279
90 % 3 4 4525
70 % 3 4 4480
50 % 18 21 1095
40 % 18 21 1116
30 % 18 21 1100

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.