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An Information Portal to 111558 Biological Macromolecular Structures

Electron cryo-microscopy of Chikungunya virus
Sequence Clustering and Redundancy Reduction Results
3J2W
Sequence Clusters for the Sequence Entities in PDB 3J2W
Entity #1: Chains: A,B,C,D - Glycoprotein E1 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 5486
95% 2 3 6088
90% 2 3 6068
70% 2 3 5935
50% 5 7 2737
40% 5 7 2686
30% 5 7 2512
Entity #2: Chains: M,N,O,P - Glycoprotein E2 protein, length: 336 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 6 3733
95% 5 6 4403
90% 5 6 4438
70% 5 6 4405
50% 5 6 4203
40% 5 6 3984
30% 5 7 2831
Entity #3: Chains: E,F,G,H - Glycoprotein E1 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 19875
95% 1 1 17118
90% 1 1 16665
70% 1 1 15441
50% 1 1 13542
40% 1 1 12164
30% 1 1 10473
Entity #4: Chains: Q,R,S,T - Glycoprotein E2 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 19596
95% 1 1 16875
90% 1 1 16434
70% 1 1 15226
50% 1 1 13334
40% 1 1 11977
30% 1 1 10304
Entity #5: Chains: I,J,K,L - Capsid protein protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 18254
95% 1 1 15913
90% 3 4 4152
70% 3 4 4117
50% 17 20 1032
40% 17 20 1055
30% 17 20 1030
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.