Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 6994
95 % 2 3 7574
90 % 2 3 7522
70 % 2 3 7328
50 % 5 7 3365
40 % 5 7 3257
30 % 5 7 3058
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3229
95 % 6 8 3988
90 % 6 8 4027
70 % 6 8 3976
50 % 6 8 3851
40 % 6 8 3688
30 % 6 9 2781
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3229
95 % 7 8 3988
90 % 7 8 4027
70 % 7 8 3976
50 % 7 8 3851
40 % 7 8 3688
30 % 7 9 2781
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24588
95 % 1 1 20992
90 % 1 1 20412
70 % 1 1 18724
50 % 1 1 16278
40 % 1 1 14524
30 % 1 1 12440
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24248
95 % 1 1 20688
90 % 1 1 20121
70 % 1 1 18461
50 % 1 1 16032
40 % 1 1 14302
30 % 1 1 12239
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22642
95 % 1 1 19523
90 % 3 4 5194
70 % 3 4 5106
50 % 19 22 1215
40 % 19 22 1226
30 % 19 22 1204

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.