Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 5751
95 % 2 3 6346
90 % 2 3 6323
70 % 2 3 6169
50 % 5 7 2842
40 % 5 7 2780
30 % 5 7 2596
Entity #2 | Chains: M,N,O,P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 2657
95 % 6 7 3348
90 % 6 7 3389
70 % 6 7 3374
50 % 6 7 3271
40 % 6 7 3157
30 % 6 8 2366
Entity #3 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20776
95 % 1 1 17855
90 % 1 1 17366
70 % 1 1 16045
50 % 1 1 14045
40 % 1 1 12584
30 % 1 1 10821
Entity #4 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20478
95 % 1 1 17590
90 % 1 1 17114
70 % 1 1 15814
50 % 1 1 13828
40 % 1 1 12390
30 % 1 1 10645
Entity #5 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19055
95 % 1 1 16566
90 % 3 4 4326
70 % 3 4 4287
50 % 17 20 1075
40 % 17 20 1098
30 % 17 20 1076

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.