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Electron cryo-microscopy of Chikungunya virus
Sequence Clustering and Redundancy Reduction Results
3J2W
Sequence Clusters for the Sequence Entities in PDB 3J2W
Entity #1: Chains: A,B,C,D - Glycoprotein E1 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 4933
95% 2 3 5520
90% 2 3 5523
70% 2 3 5433
50% 5 7 2497
40% 5 7 2486
30% 5 7 2321
Entity #2: Chains: M,N,O,P - Glycoprotein E2 protein, length: 336 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 6 3292
95% 5 6 3925
90% 5 6 3969
70% 5 6 3967
50% 5 6 3852
40% 5 6 3663
30% 5 7 2607
Entity #3: Chains: E,F,G,H - Glycoprotein E1 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 18177
95% 1 1 15734
90% 1 1 15347
70% 1 1 14246
50% 1 1 12509
40% 1 1 11238
30% 1 1 9724
Entity #4: Chains: Q,R,S,T - Glycoprotein E2 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 17916
95% 1 1 15502
90% 1 1 15127
70% 1 1 14039
50% 1 1 12309
40% 1 1 11054
30% 1 1 9557
Entity #5: Chains: I,J,K,L - Capsid protein protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 16663
95% 1 1 14616
90% 3 4 3696
70% 3 4 3691
50% 17 20 885
40% 17 20 912
30% 17 20 900
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.