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Electron cryo-microscopy of Chikungunya virus
Sequence Clustering and Redundancy Reduction Results
3J2W
Sequence Clusters for the Sequence Entities in PDB 3J2W
Entity #1: Chains: A,B,C,D - Glycoprotein E1 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 4956
95% 2 3 5545
90% 2 3 5549
70% 2 3 5456
50% 5 7 2509
40% 5 7 2494
30% 5 7 2326
Entity #2: Chains: M,N,O,P - Glycoprotein E2 protein, length: 336 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 6 3302
95% 5 6 3937
90% 5 6 3980
70% 5 6 3980
50% 5 6 3869
40% 5 6 3679
30% 5 7 2616
Entity #3: Chains: E,F,G,H - Glycoprotein E1 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 18248
95% 1 1 15797
90% 1 1 15407
70% 1 1 14295
50% 1 1 12549
40% 1 1 11276
30% 1 1 9751
Entity #4: Chains: Q,R,S,T - Glycoprotein E2 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 17987
95% 1 1 15566
90% 1 1 15188
70% 1 1 14089
50% 1 1 12349
40% 1 1 11092
30% 1 1 9584
Entity #5: Chains: I,J,K,L - Capsid protein protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 16728
95% 1 1 14677
90% 3 4 3706
70% 3 4 3704
50% 17 20 889
40% 17 20 915
30% 17 20 902
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.