Sequence Similarity Clusters for the Entities in PDB 3J2W

Entity #1 | Chains: A,B,C,D
Glycoprotein E1 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 6527
95 % 2 3 7062
90 % 2 3 7029
70 % 2 3 6835
50 % 5 7 3183
40 % 5 7 3086
30 % 5 7 2901
Entity #2 | Chains: M,N,O
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 3020
95 % 6 8 3773
90 % 6 8 3806
70 % 6 8 3751
50 % 6 8 3646
40 % 6 8 3498
30 % 6 9 2627
Entity #3 | Chains: P
Glycoprotein E2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 3020
95 % 7 8 3773
90 % 7 8 3806
70 % 7 8 3751
50 % 7 8 3646
40 % 7 8 3498
30 % 7 9 2627
Entity #4 | Chains: E,F,G,H
Glycoprotein E1 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23130
95 % 1 1 19733
90 % 1 1 19204
70 % 1 1 17720
50 % 1 1 15463
40 % 1 1 13813
30 % 1 1 11847
Entity #5 | Chains: Q,R,S,T
Glycoprotein E2 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22807
95 % 1 1 19445
90 % 1 1 18928
70 % 1 1 17467
50 % 1 1 15226
40 % 1 1 13599
30 % 1 1 11654
Entity #6 | Chains: I,J,K,L
Capsid protein protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21281
95 % 1 1 18359
90 % 3 4 4846
70 % 3 4 4776
50 % 19 22 1152
40 % 19 22 1166
30 % 19 22 1144

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.