Sequence Similarity Clusters for the Entities in PDB 3IXT

Entity #1 | Chains: B,L
Motavizumab Fab light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 10197
95 % 4 5 6850
90 % 452 685 3
70 % 1226 1845 2
50 % 2995 4545 1
40 % 2995 4545 1
30 % 3497 5350 1
Entity #2 | Chains: A,H
Motavizumab Fab heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 10146
95 % 3 4 7544 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.4
PDBFlex
90 % 4 5 6792
70 % 1448 2201 1
50 % 2996 4545 1
40 % 2996 4545 1
30 % 3498 5350 1
Entity #3 | Chains: C,P
Fusion glycoprotein F1 protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48159
95 % 1 1 36062 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 34475
70 % 1 1 30771
50 % 1 1 26390
40 % 1 1 23350
30 % 1 1 19875

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.