Sequence Similarity Clusters for the Entities in PDB 3IXT

Entity #1 | Chains: B,L
Motavizumab Fab light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 5834
95 % 5 6 4867 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.4
PDBFlex
90 % 497 746 3
70 % 1575 2392 1
50 % 3192 4843 1
40 % 3192 4843 1
30 % 3734 5705 1
Entity #2 | Chains: A,H
Motavizumab Fab heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 10607
95 % 4 5 5206 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.4
PDBFlex
90 % 5 6 4870
70 % 1539 2342 2
50 % 3193 4843 1
40 % 3193 4843 1
30 % 3735 5705 1
Entity #3 | Chains: C,P
Fusion glycoprotein F1 protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50117
95 % 1 1 37495 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 35797
70 % 1 1 31838
50 % 1 1 27257
40 % 1 1 24108
30 % 1 1 20535

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures