Sequence Similarity Clusters for the Entities in PDB 3IXT

Entity #1 | Chains: B,L
Motavizumab Fab light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 5169
95 % 5 6 5165 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.5
PDBFlex
90 % 523 793 2
70 % 1695 2593 1
50 % 3448 5263 1
40 % 3912 5933 1
30 % 4861 7388 1
Entity #2 | Chains: A,H
Motavizumab Fab heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 8006
95 % 4 5 5365 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.0
PDBFlex
90 % 5 6 4967
70 % 1665 2550 2
50 % 3449 5263 1
40 % 3913 5933 1
30 % 4862 7388 1
Entity #3 | Chains: C,P
Fusion glycoprotein F1 protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42558
95 % 1 1 32185 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 30812
70 % 1 1 27579
50 % 1 1 23598
40 % 1 1 20789
30 % 1 1 18913

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures