Sequence Similarity Clusters for the Entities in PDB 3IXT

Entity #1 | Chains: B,L
Motavizumab Fab light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 5876
95 % 5 6 4922 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.4
PDBFlex
90 % 509 763 2
70 % 1599 2426 1
50 % 3241 4913 1
40 % 3241 4913 1
30 % 3787 5780 1
Entity #2 | Chains: A,H
Motavizumab Fab heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 10695
95 % 4 5 5258 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.4
PDBFlex
90 % 5 6 4921
70 % 1563 2376 2
50 % 3242 4913 1
40 % 3242 4913 1
30 % 3788 5780 1
Entity #3 | Chains: C,P
Fusion glycoprotein F1 protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50464
95 % 1 1 37724 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 36001
70 % 1 1 32013
50 % 1 1 27385
40 % 1 1 24222
30 % 1 1 20619

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures