Sequence Similarity Clusters for the Entities in PDB 3IXT

Entity #1 | Chains: B,L
Motavizumab Fab light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 5321
95 % 5 6 5311 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.5
PDBFlex
90 % 549 832 2
70 % 1739 2670 1
50 % 3538 5421 1
40 % 4014 6121 1
30 % 4967 7588 1
Entity #2 | Chains: A,H
Motavizumab Fab heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 8207
95 % 4 5 5526 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.0
PDBFlex
90 % 5 6 5097
70 % 1710 2629 2
50 % 3539 5421 1
40 % 4015 6121 1
30 % 4968 7588 1
Entity #3 | Chains: C,P
Fusion glycoprotein F1 protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43535
95 % 1 1 32961 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 34865
70 % 1 1 28138
50 % 1 1 24082
40 % 1 1 21219
30 % 1 1 19354

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures