Sequence Similarity Clusters for the Entities in PDB 3IKQ

Entity #1 | Chains: A,B,C
Pulmonary surfactant-associated protein D protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 2379
95 % 7 7 3026 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 7 7 3073
70 % 7 7 3045
50 % 7 7 2999
40 % 8 8 2818
30 % 56 65 278

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures