Sequence Similarity Clusters for the Entities in PDB 3IJE

Entity #1 | Chains: A
Integrin alpha-V protein, length: 967 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 11187
95 % 4 14 4878 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 4 14 4920
70 % 4 14 4798
50 % 4 14 4585
40 % 4 14 4322
30 % 5 16 3288
Entity #2 | Chains: B
Integrin beta-3 protein, length: 695 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 13 4987
95 % 5 16 3942 Flexibility: Medium
Max RMSD: 14.6, Avg RMSD: 5.7
PDBFlex
90 % 5 16 4001
70 % 5 16 3920
50 % 5 16 3817
40 % 7 22 1857
30 % 7 22 1781

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures