Sequence Similarity Clusters for the Entities in PDB 3IJE

Entity #1 | Chains: A
Integrin alpha-V protein, length: 967 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 11 5693
95 % 4 14 4666 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.3
PDBFlex
90 % 4 14 4688
70 % 4 14 4588
50 % 4 14 4401
40 % 4 14 4193
30 % 5 16 3268
Entity #2 | Chains: B
Integrin beta-3 protein, length: 695 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 7048
95 % 5 16 3749 Flexibility: Medium
Max RMSD: 14.6, Avg RMSD: 5.7
PDBFlex
90 % 5 16 3800
70 % 5 16 3746
50 % 5 16 3639
40 % 7 22 1777
30 % 7 22 1735

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures