Sequence Similarity Clusters for the Entities in PDB 3IJE

Entity #1 | Chains: A
Integrin alpha-V protein, length: 967 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 9997
95 % 4 15 4847 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 4 15 4872
70 % 4 15 4728
50 % 4 15 4510
40 % 4 15 4272
30 % 5 17 3220
Entity #2 | Chains: B
Integrin beta-3 protein, length: 695 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 13 5292
95 % 5 16 4174 Flexibility: Medium
Max RMSD: 14.6, Avg RMSD: 5.7
PDBFlex
90 % 5 16 4221
70 % 6 17 3811
50 % 6 17 3681
40 % 8 23 1872
30 % 8 23 1813

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures