Sequence Similarity Clusters for the Entities in PDB 3IJE

Entity #1 | Chains: A
Integrin alpha-V protein, length: 967 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 9310
95 % 4 15 4705 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 4 15 4742
70 % 4 15 4629
50 % 4 15 4435
40 % 4 15 4200
30 % 5 17 3174
Entity #2 | Chains: B
Integrin beta-3 protein, length: 695 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 13 5147
95 % 5 16 4062 Flexibility: Medium
Max RMSD: 14.6, Avg RMSD: 5.7
PDBFlex
90 % 5 16 4119
70 % 5 16 4035
50 % 5 16 3912
40 % 7 22 1911
30 % 7 22 1828

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures