Sequence Similarity Clusters for the Entities in PDB 3II6

Entity #1 | Chains: A,B,C,D
DNA repair protein XRCC4 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21931
95 % 2 3 9445 Flexibility: Medium
Max RMSD: 5.7, Avg RMSD: 3.3
PDBFlex
90 % 2 3 9340
70 % 6 9 2620
50 % 6 9 2593
40 % 6 9 2549
30 % 6 9 2411
Entity #2 | Chains: X,Y
DNA ligase 4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38538
95 % 1 1 29899 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 28852
70 % 1 1 26016
50 % 1 1 22270
40 % 1 1 19617
30 % 1 1 16653

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures