Sequence Similarity Clusters for the Entities in PDB 3II6

Entity #1 | Chains: A,B,C,D
DNA repair protein XRCC4 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21037
95 % 2 3 9129 Flexibility: Medium
Max RMSD: 5.7, Avg RMSD: 3.5
PDBFlex
90 % 2 3 9037
70 % 6 8 3100
50 % 6 8 3032
40 % 6 8 2959
30 % 6 8 2769
Entity #2 | Chains: X,Y
DNA ligase 4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37126
95 % 1 1 28801
90 % 1 1 27810
70 % 1 1 25184
50 % 1 1 21600
40 % 1 1 19032
30 % 1 1 16154

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.