Sequence Similarity Clusters for the Entities in PDB 3II6

Entity #1 | Chains: A,B,C,D
DNA repair protein XRCC4 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21413
95 % 2 3 9254 Flexibility: Medium
Max RMSD: 5.7, Avg RMSD: 3.4
PDBFlex
90 % 2 3 9157
70 % 6 9 2549
50 % 6 9 2524
40 % 6 9 2487
30 % 6 9 2360
Entity #2 | Chains: X,Y
DNA ligase 4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37734
95 % 1 1 29296 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 28274
70 % 1 1 25529
50 % 1 1 21857
40 % 1 1 19259
30 % 1 1 16349

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.