Sequence Similarity Clusters for the Entities in PDB 3II6

Entity #1 | Chains: A,B,C,D
DNA repair protein XRCC4 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22446
95 % 2 3 9659 Flexibility: Medium
Max RMSD: 5.7, Avg RMSD: 3.3
PDBFlex
90 % 2 3 9552
70 % 6 9 2682
50 % 6 9 2650
40 % 6 9 2601
30 % 6 9 2459
Entity #2 | Chains: X,Y
DNA ligase 4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39296
95 % 1 1 30445 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 29361
70 % 1 1 26454
50 % 1 1 22617
40 % 1 1 19916
30 % 1 1 16900

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures