Sequence Similarity Clusters for the Entities in PDB 3II6

Entity #1 | Chains: A,B,C,D
DNA repair protein XRCC4 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22084
95 % 2 3 9491 Flexibility: Medium
Max RMSD: 5.7, Avg RMSD: 3.3
PDBFlex
90 % 2 3 9386
70 % 6 9 2641
50 % 6 9 2613
40 % 6 9 2567
30 % 6 9 2428
Entity #2 | Chains: X,Y
DNA ligase 4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38776
95 % 1 1 30052 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 28989
70 % 1 1 26134
50 % 1 1 22363
40 % 1 1 19696
30 % 1 1 16706

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures