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An Information Portal to 108124 Biological Macromolecular Structures

Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C2221
Sequence Clustering and Redundancy Reduction Results
3IDY
Sequence Clusters for the Sequence Entities in PDB 3IDY
Entity #1: Chains: A,G - HIV-1 HxBc2 gp120 core protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11479
95% 15 15 3086
90% 15 15 3124
70% 23 29 1096
50% 23 29 1156
40% 23 29 1181
30% 23 31 1076
Entity #2: Chains: B,H - Fab b13 heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21342
95% 2 2 17944
90% 2 2 17472
70% 1264 1561 2
50% 2621 3236 1
40% 2622 3237 1
30% 3063 3821 1
Entity #3: Chains: C,L - Fab b13 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21609
95% 2 2 18145
90% 312 389 5
70% 1110 1358 3
50% 2622 3236 1
40% 2623 3237 1
30% 3064 3821 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.