Sequence Similarity Clusters for the Entities in PDB 3IDY

Entity #1 | Chains: A,G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13949
95 % 15 15 3798
90 % 15 15 3831
70 % 91 126 174
50 % 91 126 213
40 % 91 126 235
30 % 91 129 238
Entity #2 | Chains: B,H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 25744
95 % 2 2 21484
90 % 2 2 20873
70 % 1636 2096 1
50 % 3390 4337 1
40 % 3390 4337 1
30 % 3987 5109 1
Entity #3 | Chains: C,L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26069
95 % 2 2 21728
90 % 495 640 3
70 % 1396 1765 2
50 % 3391 4337 1
40 % 3391 4337 1
30 % 3988 5109 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.