Sequence Similarity Clusters for the Entities in PDB 3IDY

Entity #1 | Chains: A,G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13330
95 % 15 15 3602
90 % 15 15 3643
70 % 87 122 167
50 % 87 122 198
40 % 87 122 215
30 % 87 125 226
Entity #2 | Chains: B,H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24631
95 % 2 2 20580
90 % 2 2 19987
70 % 1526 1952 1
50 % 3151 4026 1
40 % 3153 4028 1
30 % 3718 4764 1
Entity #3 | Chains: C,L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24926
95 % 2 2 20799
90 % 462 590 3
70 % 1311 1653 3
50 % 3152 4026 1
40 % 3154 4028 1
30 % 3719 4764 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.