POP-OUT | CLOSE
 
Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C2221
Sequence Clustering and Redundancy Reduction Results
3IDY
Sequence Clusters for the Sequence Entities in PDB 3IDY
Entity #1: Chains: A,G - HIV-1 HxBc2 gp120 core protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 10834
95% 15 15 2825
90% 15 15 2873
70% 23 27 1155
50% 23 27 1218
40% 23 27 1253
30% 23 29 1153
Entity #2: Chains: B,H - Fab b13 heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20246
95% 2 2 17108
90% 2 2 16672
70% 1205 1480 2
50% 2499 3070 1
40% 2500 3071 1
30% 2919 3629 1
Entity #3: Chains: C,L - Fab b13 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20495
95% 2 2 17292
90% 294 365 4
70% 1059 1291 3
50% 2500 3070 1
40% 2501 3071 1
30% 2920 3629 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.